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. 2015 Jun 29;43(15):7504–7520. doi: 10.1093/nar/gkv651

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — Scatterplots of alignment score deficit against interior edit distance for motif group IL_95652.3 (top), IL_03282.1 (center) and IL_86357.3 (bottom). Red dots are from IL_Rand, black dots are from multiple sequence alignments and large blue X's are from 3D instances. A uniformly distributed random number is added to the interior edit distance for each dot to aid in visualization. The acceptance region is shown in light gray, and Cutoff scores 0 and 50 are shown by the darker lines; Cutoff score 100 is at (0,0).