Table 1. RNA dataset: details and length of MD simulations.
System | PDB code | Chain length | Simulation time (µs) |
---|---|---|---|
Duplex | 1EKA | 16 | 1.0 |
Sarcin-ricin domain | 1Q9A | 25 | 0.9 |
Hammerhead ribozyme | 301D | 41 | 0.25 |
add riboswitch | 1Y26 | 71 | 0.25 |
thiMriboswitch | 2GDI | 78 | N.A. |
For the thiM riboswitch, no MD was performed.