Table 1. Thermal melting data for the evaluation of self-pairing and cross-pairing abilities of XyloNA/dXyloNA vs. natural DNA/RNA systems.
Oligo. no. | Type of pairing | Sequence | Tm (°C) |
---|---|---|---|
ON-1 | XyloNA1:XyloNA1 | 5′-x(GUGUACAC)-3′ | 67 |
3′-(CACAUGUG)x-5′ | |||
ON-2a | dXyloNA:dXyloNA | 5′-dx(GTGTACAC)-3′ | 57 |
3′-(CACATGTG)dx-5′ | |||
ON-3 | RNA:RNA | 5′-r(GUGUACAC)-3′ | 41 |
3′-(CACAUGUG)r-5′ | |||
ON-4a | DNA:DNA | 5′-d(GTGTACAC)-3′ | 26 |
3′-(CACATGTG)d-5′ | |||
ON-5 | XyloNA2:RNA | 5′-x(UGCUACGC)-3′ | n.o. |
3′-(ACGAUGCG)r-5′ | |||
ON-6 | XyloNA2:DNA | 5′-x(UGCUACGC)-3′ | n.o. |
3′-(ACGATGCG)d-5′ | |||
ON-7 | RNA:RNA | 5′-r(UGCUACGC)-3′ | 50 |
3′-(ACGAUGCG)r-5′ | |||
ON-8 | RNA:DNA | 5′-r(UGCUACGC)-3′ | n.c. |
3′-(ACGATGCG)d-5′ | |||
ON-9 | XyloNA3:RNA | xU12:rA12 | 37–50 |
ON-10 | XyloNA3:DNA | xU12:dA12 | 35–38 |
Melting points were determined in a buffer solution (pH 7.5) containing 0.1 M NaCl, 20 mM KH2PO4, and 0.1 mM Na2EDTA. For the self-complementary sequences (ON-1 to ON-4) 8 μM and for other sequences (ON-5 to ON-10) 4 μM concentration of each strand have been used.
[a] Ref. (24); n.o., no cross-pairing observed; n.c., Tm could not be calculated due to an unfavorable melting profile. Melting profiles for ON-3, ON-7, and ON-8 are provided in the SI (Supplementary Figure S2–S4).