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. 2015 Jul 14;43(15):7189–7200. doi: 10.1093/nar/gkv719

Table 1. Thermal melting data for the evaluation of self-pairing and cross-pairing abilities of XyloNA/dXyloNA vs. natural DNA/RNA systems.

Oligo. no. Type of pairing Sequence Tm (°C)
ON-1 XyloNA1:XyloNA1 5′-x(GUGUACAC)-3′ 67
3′-(CACAUGUG)x-5′
ON-2a dXyloNA:dXyloNA 5′-dx(GTGTACAC)-3′ 57
3′-(CACATGTG)dx-5′
ON-3 RNA:RNA 5′-r(GUGUACAC)-3′ 41
3′-(CACAUGUG)r-5′
ON-4a DNA:DNA 5′-d(GTGTACAC)-3′ 26
3′-(CACATGTG)d-5′
ON-5 XyloNA2:RNA 5′-x(UGCUACGC)-3′ n.o.
3′-(ACGAUGCG)r-5′
ON-6 XyloNA2:DNA 5′-x(UGCUACGC)-3′ n.o.
3′-(ACGATGCG)d-5′
ON-7 RNA:RNA 5′-r(UGCUACGC)-3′ 50
3′-(ACGAUGCG)r-5′
ON-8 RNA:DNA 5′-r(UGCUACGC)-3′ n.c.
3′-(ACGATGCG)d-5′
ON-9 XyloNA3:RNA xU12:rA12 37–50
ON-10 XyloNA3:DNA xU12:dA12 35–38

Melting points were determined in a buffer solution (pH 7.5) containing 0.1 M NaCl, 20 mM KH2PO4, and 0.1 mM Na2EDTA. For the self-complementary sequences (ON-1 to ON-4) 8 μM and for other sequences (ON-5 to ON-10) 4 μM concentration of each strand have been used.

[a] Ref. (24); n.o., no cross-pairing observed; n.c., Tm could not be calculated due to an unfavorable melting profile. Melting profiles for ON-3, ON-7, and ON-8 are provided in the SI (Supplementary Figure S2–S4).