TABLE 6.

Estimated two^a and three-locus haplotypes in the RV144 individuals with frequencies greater than 1%

DRB1-DQB1-DPB1	Frequency	DRB1-DQB1	Frequency	DRB1-DPB1	Frequency	DQB1-DPB1	Frequency
15:02-05:01:01G-13:01:01	0.069	12:02-03:01:01G	0.125	15:02-13:01:01	0.068	05:01:01G-13:01:01	0.069
09:01:02G-03:03:02G-05:01:01	0.053	15:02-05:01:01G	0.109	09:01:02G-05:01:01	0.052	05:02:01G-05:01:01	0.064
16:02-05:02:01G-05:01:01	0.030	09:01:02G-03:03:02G	0.102	16:02-05:01:01	0.030	03:03:02G-05:01:01	0.055
03:01:01G-02:01:01G-04:01:01	0.028	07:01:01G-02:01:01G	0.088	12:02-13:01:01	0.029	02:01:01G-04:01:01	0.048
12:02-03:01:01G-05:01:01	0.024	15:01:01G-06:01:01G	0.052	07:01:01G-04:01:01	0.028	04:01:01G-05:01:01	0.017
07:01:01G-02:01:01G-04:01:01	0.024	16:02-05:02:01G	0.050	03:01:01G-04:01:01	0.025	02:01:01G-17:01	0.015
04:05-04:01:01G-05:01:01	0.016	03:01:01G-02:01:01G	0.049	12:02-21:01	0.020	03:02:01G-02:01:02	0.014
12:02-03:01:01G-13:01:01	0.016	12:02-05:02:01G	0.041	15:02-14:01	0.019	03:01:01G-21:01	0.014
12:02-03:01:01G-02:01:02	0.016	04:05-04:01:01G	0.036	14:01:01G-05:01:01	0.019	05:03:01G-01:01:01	0.012
14:01:01G-05:02:01G-05:01:01	0.015	14:04-05:03:01G	0.034	07:01:01G-17:01	0.013	02:01:01G-04:02:01	0.011
15:02-05:01:01G-05:01:01	0.014	15:01:01G-05:02:01G	0.026	07:01:01G-04:02:01	0.011
07:01:01G-02:01:01G-04:02:01	0.013	11:01:01G-03:01:01G	0.023
12:02-03:01:01G-03:01:01	0.013	10:01-05:01:01G	0.022
12:02-03:01:01G-21:01	0.012	14:01:01G-05:02:01G	0.022
07:01:01G-02:01:01G-17:01	0.011	11:06:01G-03:01:01G	0.018
12:02-05:02:01G-13:01:01	0.011	04:03-03:02:01G	0.017
12:02-05:02:01G-21:01	0.011	08:03-06:01:01G	0.015
		13:12-03:01:01G	0.011

LD, Linkage disequilibrium.

^aHaplotypes in significant LD.