Table 1.
Gene Target |
Accession # | RT-PCR Primer sequences | Functional Role |
---|---|---|---|
IL-6a | NM_012589 | Forward: 5’-TAGTCCTTCCTACCCCAACTTCC-3’ | Cytokine produced in response to infection or injury and a potent inducer of the acute phase response, particularly as a pyrogen; has both pro- and anti-inflammatory properties depending on nature of inflammatory insult |
Reverse: 5’-TTGGTCCTTAGCCACTCCTTC-3’ | |||
IL-1βb | NM_031512 | Forward: 5’-AGGACCCAAGCACCTTCTTT-3’ | Pro-inflammatory cytokine that is a robust immune system activator; involved in the production of sickness behaviors and fever following infection; often used as an immediate early gene marker of microglia activation |
Reverse: 5’-AGACAGCACGAGGCATTTTT-3’ | |||
TNFαc | NM_012675 | Forward: 5’-AACCACCAAGCAGAGGAGCA-3’ | Cytokine produced by a variety of different cell types, with pleiotropic actions including activation of macrophages and endothelial cells during an immune response; typically one of the first cytokines evoked by LPSd exposure |
Reverse: 5’-ATGGCAAATCGGCTGACGGT-3’ | |||
IκBαe | NM_080899 | Forward: 5’-CTGTTGAAGTGTGGGGCTGA-3’ | When NF-κBf is activated and translocates to the nucleus, IκBα is rapidly induced and sequesters further NF-κB translocation, thus IκBα gene expression is often used as a reporter of NF-κB activation |
Reverse: 5’-AGGGCAACTCATCTTCCGTG-3’ | |||
GAPDHg | NM_017008 | Forward: 5’-ATGACTCTACCCACGGCAAG-3’ | Enzyme important for cellular metabolic function, but also has been associated with apoptosis, ER-Golgi functioning, and axonal transport; was used as a stable reference gene against which target gene expression was examined |
Reverse: 5’-AGCATCACCCCATTTGATGT-3’ |
Interleukin-6
interleukin-1 beta
tumor necrosis factor alpha
lipopolysaccharide
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
nuclear factor kappa-light-chain-enhancer of activated B cells
Glyceraldehyde 3-phosphate dehydrogenase