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. Author manuscript; available in PMC: 2016 Sep 1.
Published in final edited form as: Physiol Behav. 2015 Feb 21;148:131–144. doi: 10.1016/j.physbeh.2015.02.032

Table 1.

RT-PCR Primers and Sequences Utilized in Experiments 1 and 2.

Gene
Target
Accession # RT-PCR Primer sequences Functional Role
IL-6a NM_012589 Forward: 5’-TAGTCCTTCCTACCCCAACTTCC-3’ Cytokine produced in response to infection or injury and a potent inducer of the acute phase response, particularly as a pyrogen; has both pro- and anti-inflammatory properties depending on nature of inflammatory insult
Reverse: 5’-TTGGTCCTTAGCCACTCCTTC-3’
IL-1βb NM_031512 Forward: 5’-AGGACCCAAGCACCTTCTTT-3’ Pro-inflammatory cytokine that is a robust immune system activator; involved in the production of sickness behaviors and fever following infection; often used as an immediate early gene marker of microglia activation
Reverse: 5’-AGACAGCACGAGGCATTTTT-3’
TNFαc NM_012675 Forward: 5’-AACCACCAAGCAGAGGAGCA-3’ Cytokine produced by a variety of different cell types, with pleiotropic actions including activation of macrophages and endothelial cells during an immune response; typically one of the first cytokines evoked by LPSd exposure
Reverse: 5’-ATGGCAAATCGGCTGACGGT-3’
IκBαe NM_080899 Forward: 5’-CTGTTGAAGTGTGGGGCTGA-3’ When NF-κBf is activated and translocates to the nucleus, IκBα is rapidly induced and sequesters further NF-κB translocation, thus IκBα gene expression is often used as a reporter of NF-κB activation
Reverse: 5’-AGGGCAACTCATCTTCCGTG-3’
GAPDHg NM_017008 Forward: 5’-ATGACTCTACCCACGGCAAG-3’ Enzyme important for cellular metabolic function, but also has been associated with apoptosis, ER-Golgi functioning, and axonal transport; was used as a stable reference gene against which target gene expression was examined
Reverse: 5’-AGCATCACCCCATTTGATGT-3’
a

Interleukin-6

b

interleukin-1 beta

c

tumor necrosis factor alpha

d

lipopolysaccharide

e

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha

f

nuclear factor kappa-light-chain-enhancer of activated B cells

g

Glyceraldehyde 3-phosphate dehydrogenase