Table 1. Regulatory interactions inference algorithms.

Paper	Algorithm Capabilities
	Whole genome analysis	Uneven time course	Causality inference	Pairwise connections
Windram et al. [22]	✔		✔
Nie et al. [23]	✔	✔		✔
Kwon et al. [24]	✔		✔	✔
Bickel et al. [25]
Schmitt et al. [26]
Barker et al. [7]		✔	✔	✔
Zhao et al. [8]
Misra et al. [9]