Table 2.

Performance of each reference panel when imputing z-scores for GALA II Puerto Ricans

Panel	n	MSE	r
GALA II	3231	0.234	0.903
JPT	2572	0.884	0.626
PUR	3103	0.554	0.757
1KG-Genome	2759	0.587	0.760
1KG-Chrom	2906	0.473	0.800
1KG-Window	2839	0.467	0.804
1KG-No-MXL-PUR	2912	0.520	0.795