Table 1. Binning performance on synthetic metagenomic assemblies.
| MetaBAT | Canopy | CONCOCT | MaxBin | GroopMb | |
|---|---|---|---|---|---|
| Number of bins identified (>200 kb) | 340 | 230 | 235 | 260 | 445 |
| Number of genomes detected (Precision > .9 & Recall > .3) | 111 | 90 | 56 | 39 | 6 |
| Wall time (16 cores; 32 hyper-threads) | 00:13:55 | 00:21:01a | 104:58:01 | 20:51:19 | 45:29:39 |
| Peak memory usage (for binning step) | 3.9G | 1.82Ga | 9.55G | 7.7G | 38G |
Notes.
a
Canopy only use abundance table as input, so it should have taken more time and memory to read and write sequence data like the others.
b
Manual steps were not used.