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. Author manuscript; available in PMC: 2015 Sep 1.
Published in final edited form as: Biochemistry. 2008 Aug 15;47(36):9540–9552. doi: 10.1021/bi800544d

Table 4.

Sequence Coverage of RhoGDIα Following In-Gel Digestion with Trypsin.a

001 MAEQEPTAEQ LAQIAAENEE DEHSVNYKPP AQKSIQEIQE LDKDDESLRK YKEALLGRVA VSADPNVPNV
071 VVTGLTLVCS SAPGPLELDL TGDLESFKKQ SFVLKEGVEY RIKISFRVNR EIVSGMKYIQ HTYRKGVKID
141 KTDYMVGSYG PRAEEYEFLT PVEEAPKGML ARGSYSIKSR FTDDDKTDHL SWEWNLTIKK DWKD
m/z
Accuracyb
(ppm)
Position Sequence Charge Observed Calculated
34–49 SIQEIQELDKDDESLR 2 959.4602 959.4736 14.0
34–50 SIQEIQELDKDDESLRK 2 1023.5096 1023.5211 11.2
51–58 YKEALLGR 1 949.5387 949.5465 8.2
53–58 EALLGR 1 658.3844 658.3883 5.9
59–99 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKK 4 1039.5316 1039.5526 20.2
99–105 KQSFVLK 1 849.5158 849.5193 4.1
100–105 QSFVLK 1 721.4184 721.4243 8.2
106–111 EGVEYR 1 752.3508 752.3573 8.6
114–117 ISFR 1 522.3012 522.3034 4.2
118–127 VNREIVSGMK 1 1132.617 1132.6143 2.4
121–127 EIVSGMK 1 763.394 763.4019 10.3
128–134 YIQHTYR 1 980.4887 980.4948 6.2
128–135 YIQHTYRK 1 1108.5764 1108.5898 12.1
139–152 IDKTDYMVGSYGPR 2 801.3766 801.385 10.5
142–152 TDYMVGSYGPR 2 623.2784 623.2821 5.9
153–167 AEEYEFLTPVEEAPK 2 876.4141 876.4223 9.4
168–172 GMLAR 1 547.299 547.3021 5.7
173–178 GSYSIK 1 654.3412 654.3457 6.9
179–199 SRFTDDDKTDHLSWEWNLTIK 3 870.0851 870.0884 3.8
181–199 FTDDDKTDHLSWEWNLTIK 3 789.0358 789.0441 10.5
181–200 FTDDDKTDHLSWEWNLTIKK 3 831.7341 831.7424 10.0
187–199 TDHLSWEWNLTIK 3 548.2857 548.279 12.2
a

The sequence of the RhoGDIα is shown in single letter code. The proteolytic fragments sequenced by MSMS are shown in bold. The sequence coverage by amino acid count is 79.4%;

b

Accuracy is the difference between the calculated and observed m/z expressed in ppm of the calculated value.