Table 3. The pK a values for the catalytic base residues of C. bescii PL3 and B.subtilis PL1 indicate that the local chemical environment, as well as the amino-acid identity, determine the optimal pH ranges for each enzyme.
PDB code | Apo/holo | Organism | PROPKA | H++ |
---|---|---|---|---|
C. bescii PL3, Lys108 | ||||
3t9g | Apo | C. bescii | 9.7 | >12 |
4ew9 | Holo† | C. bescii | 8.7 | 7.2 |
B. subtilis PL1, Arg279 | ||||
1bn8 | Apo | B. subtilis | 12.0 | >12 |
2nzm | Holo | B. subtilis | 9.1 | 9.1 |
4ew9 represents PL3 with reacted ligand or product.