Table 1. Statistical parameters of CRE co-occurrence networks of the input gene-sets.
Input gene-set | Tissue | No. of promoters | CRE co-occurrence network statistics | ||||
---|---|---|---|---|---|---|---|
Nodes | Edges | Cliques | Clique size (k) | CREs in cliques | |||
WRKY | Leaf | 20 | 110 | 260 | 38 | 3, 4 | 38 |
Root | 20 | 113 | 257 | 69 | 3 | 60 | |
MYB | Leaf | 18 | 112 | 247 | 47 | 3, 4 | 54 |
Root | 14 | 101 | 212 | 38 | 3, 4 | 47 | |
ERF | Leaf | 19 | 121 | 347 | 76 | 3, 4 | 97 |
Root | 23 | 118 | 261 | 44 | 3 | 55 | |
NAC | Leaf | 15 | 95 | 162 | 17 | 3, 4 | 31 |
Root | 6 | — | — | — | — | — | |
Chitin catabolic process | Leaf | 11 | 93 | 208 | 53 | 3, 4, 5 | 61 |
Root | 3 | — | — | — | — | — | |
Response to stress | Leaf | 23 | 122 | 351 | 97 | 3 | 73 |
Root | 12 | 90 | 210 | 45 | 3, 4 | 61 | |
Defense response | Leaf | 19 | 111 | 287 | 88 | 3, 4, 5 | 63 |
Root | 12 | 83 | 177 | 60 | 3, 4 | 47 | |
GPCR signaling pathway | Leaf | 26 | 122 | 291 | 48 | 3, 4 | 57 |
Root | 11 | 85 | 219 | 59 | 3, 4, 5, 6 | 54 |