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. 2015 Sep 2;16(1):276. doi: 10.1186/s12859-015-0718-6

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© Rybarczyk et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — (a) The reference secondary structure of archaeal tyrosyl-tRNA with LW-annotated non-canonical base pairs, and its dot-bracket notation. Base pairs close to particular LW interaction, but not meeting strict criteria for membership are connected by gray dashed lines. (b–e) Secondary structures predicted by (b) RC/Rp-1, (c) RC/Rp-2, (d) RC/Rp-3, and (e) RNAwolf, and arc diagrams to display the results of comparing dot-bracket representations of particular predicted models with the reference structure. Orange arcs show pseudoknot interaction