Table 1.
S. goodei and S. saxicola ortholog pairs that were identified as positive selection
| Annotation | Ka | Ks | Ka/Ks | Length | S. goodei Hit ACC | S. goodei E-value | S. saxicola Hit ACC | S. saxicola E-value |
|---|---|---|---|---|---|---|---|---|
| 12 kda fk506-binding protein | 0.058 | 0.011 | 5.262 | 327 | P48375 | 4.55E-36 | P48375 | 2.16E-38 |
| 40s ribosomal protein x isoform | 0.014 | 0.004 | 3.209 | 594 | Q642H9 | 7.20E-144 | N/A | N/A |
| 60s ribosomal protein l17 | 0.232 | 0.162 | 1.434 | 153 | P18621 | 9.36E-62 | N/A | N/A |
| 60s ribosomal protein l9 | 0.019 | 0.011 | 1.735 | 300 | Q90YW0 | 2.53E-92 | Q90YW0 | 6.04E-44 |
| atp synthase mitochondrial f1 complex assembly factor 1 flags: precusor | 0.032 | 0.02 | 1.583 | 210 | Q1L987 | 2.27E-33 | Q1L987 | 3.14E-81 |
| bone morphogenetic protein 7 flags: precursor | 0.011 | 0.01 | 1.124 | 276 | P23359 | 1.60E-30 | P23359 | 4.32E-45 |
| chitobiosyldiphosphodolichol beta-mannosyltransferase | 0.021 | 0.019 | 1.104 | 249 | Q9BT22 | 1.46E-52 | Q9BT22 | 5.16E-29 |
| choline transporter-like protein 4 solute carrier family 44 member | 0.029 | 0.021 | 1.368 | 372 | Q7T2B0 | 3.20E-60 | Q7T2B0 | 8.71E-80 |
| cytochrome c oxidase subunit mitochondrial flags: precursor | 0.01 | 0.009 | 1.07 | 423 | P00426 | 3.68E-55 | B0VYX4 | 5.39E-56 |
| cytochrome p450 26a1 | 0.117 | 0.059 | 1.979 | 168 | P79739 | 8.97E-18 | P79739 | 9.14E-29 |
| disintegrin and metalloproteinase domain-containing protein 9 flags: precursor | 0.095 | 0.057 | 1.666 | 378 | Q61072 | 2.15E-18 | Q61072 | 1.42E-08 |
| dna ligase 3 | 0.04 | 0.027 | 1.48 | 345 | P49916 | 1.25E-39 | N/A | N/A |
| dna mismatch repair protein mlh1 | 0.018 | 0.017 | 1.052 | 291 | P40692 | 1.03E-79 | P40692 | 3.94E-35 |
| dna primase large subunit | 0.126 | 0.048 | 2.651 | 354 | O89044 | 1.47E-57 | O89044 | 8.29E-25 |
| double-strand-break repair protein rad21 homolog | 0.13 | 0.087 | 1.493 | 249 | O93310 | 4.30E-13 | N/A | N/A |
| eukaryotic translation initiation factor 2 subunit 3 | 0.098 | 0.095 | 1.031 | 429 | Q2KHU8 | 1.72E-110 | Q2KHU8 | 1.35E-59 |
| f-box only protein 11 | 0.081 | 0.067 | 1.204 | 288 | Q86XK2 | 1.97E-49 | Q86XK2 | 2.69E-23 |
| f-box only protein 43 endogenous meiotic inhibitor 2 | 0.031 | 0.022 | 1.426 | 753 | Q4G163 | 1.06E-23 | Q8AXF4 | 2.07E-08 |
| glioma tumor suppressor candidate region gene 2 protein | 0.017 | 0.008 | 2.081 | 351 | Q9NZM5 | 8.21E-33 | Q9NZM5 | 6.12E-28 |
| growth factor receptor-bound protein 10 | 0.113 | 0.104 | 1.085 | 216 | Q13322 | 2.80E-47 | N/A | N/A |
| gtpase mitochondrial | 0.13 | 0.125 | 1.037 | 297 | B5X2B8 | 2.46E-27 | B5X2B8 | 1.21E-07 |
| guanine nucleotide-binding protein g subunit alpha-2 | 0.09 | 0.06 | 1.491 | 333 | P04897 | 3.39E-82 | P04897 | 2.16E-43 |
| h-2 class i histocompatibility q10 alpha chain flags: precursor | 0.104 | 0.039 | 2.681 | 522 | P01898 | 8.97E-44 | P15979 | 2.66E-32 |
| histidine triad nucleotide-binding protein 3 | 0.094 | 0.088 | 1.069 | 414 | Q28BZ2 | 1.82E-39 | Q28BZ2 | 7.95E-34 |
| homolog subfamily a member 4 flags: precursor | 0.037 | 0.029 | 1.289 | 231 | Q8WW22 | 2.56E-49 | Q8WW22 | 2.16E-25 |
| importin subunit alpha-1 | 0.114 | 0.091 | 1.254 | 789 | P52170 | 1.64E-93 | P52170 | 2.67E-72 |
| inositol-3-phosphate synthase 1-a | 0.053 | 0.046 | 1.152 | 465 | Q7ZXY0 | 3.82E-41 | Q7ZXY0 | 5.38E-37 |
| kelch domain-containing protein 1 | 0.022 | 0.011 | 2.034 | 318 | Q8N7A1 | 3.47E-34 | Q8N7A1 | 1.02E-18 |
| lag1 longevity assurance homolog 2 | 0.022 | 0.014 | 1.623 | 258 | Q96G23 | 2.83E-59 | Q3ZBF8 | 6.32E-42 |
| lamina-associated polypeptide isoform beta | 0.027 | 0.015 | 1.803 | 432 | Q62733 | 4.90E-10 | Q62733 | 9.94E-09 |
| lipid phosphate phosphohydrolase 3 | 0.09 | 0.043 | 2.096 | 201 | Q3SZE3 | 3.77E-25 | Q3SZE3 | 1.14E-50 |
| map3k12-binding inhibitory protein 1 | 0.009 | 0.008 | 1.081 | 450 | Q99LQ1 | 1.89E-38 | N/A | N/A |
| mif4g domain-containing protein a | 0.036 | 0.034 | 1.034 | 174 | B0UXU6 | 2.02E-28 | B0UXU6 | 3.33E-18 |
| n-acetylneuraminate lyase | 0.045 | 0.038 | 1.184 | 477 | Q5RDY1 | 3.28E-54 | Q6NYR8 | 8.41E-72 |
| nad-dependent deacetylase sirtuin-5 flags: precursor | 0.029 | 0.027 | 1.111 | 354 | Q8K2C6 | 4.35E-65 | Q3ZBQ0 | 2.41E-32 |
| nuclear pore complex protein nup54 | 0.075 | 0.044 | 1.714 | 492 | P70582 | 3.74E-33 | N/A | N/A |
| p43 5s rna-binding protein | 0.056 | 0.038 | 1.485 | 249 | P25066 | 9.42E-14 | P25066 | 4.10E-08 |
| pentatricopeptide repeat-containing protein 2 | 0.012 | 0.011 | 1.073 | 585 | Q566X6 | 1.63E-44 | Q566X6 | 7.01E-97 |
| peptidyl-prolyl cis-trans isomerase-like 2 | 0.018 | 0.008 | 2.303 | 471 | Q13356 | 4.11E-74 | Q13356 | 2.29E-71 |
| poly-specific ribonuclease parn | 0.019 | 0.016 | 1.2 | 375 | O95453 | 4.25E-71 | O95453 | 1.25E-61 |
| pq-loop repeat-containing protein 2 | 0.029 | 0.018 | 1.605 | 402 | Q8C4N4 | 2.03E-42 | Q8C4N4 | 4.36E-41 |
| proteasome subunit alpha type-2 | 0.045 | 0.013 | 3.55 | 423 | O73672 | 8.15E-122 | O73672 | 1.73E-64 |
| protection of telomeres protein 1 | 0.022 | 0.007 | 3.335 | 528 | Q9NUX5 | 4.88E-20 | Q9NUX5 | 1.89E-19 |
| protein b4 | 0.027 | 0.027 | 1.001 | 492 | P15308 | 2.41E-12 | P15308 | 1.47E-13 |
| protein cwc15 homolog | 0.012 | 0.01 | 1.193 | 516 | Q6IQU4 | 2.95E-27 | Q6IQU4 | 1.63E-18 |
| protein lin-9 homolog | 0.031 | 0.018 | 1.706 | 372 | Q5RHQ8 | 1.12E-79 | Q5RHQ8 | 2.81E-36 |
| protein lsm14 homolog b | 0.029 | 0.014 | 2.063 | 501 | Q566L7 | 1.29E-46 | Q566L7 | 3.57E-34 |
| protein serac1 | 0.05 | 0.035 | 1.403 | 411 | Q5SNQ7 | 4.94E-60 | Q5SNQ7 | 1.60E-44 |
| ras-related protein rab-11a flags: precursor | 0.106 | 0.028 | 3.786 | 246 | Q5ZJN2 | 1.06E-65 | Q5ZJN2 | 5.37E-25 |
| selenoprotein t1a flags: precursor | 0.033 | 0.016 | 2.056 | 288 | Q802F2 | 1.95E-80 | Q802F2 | 1.06E-35 |
| synaptotagmin-like protein 2 exophilin-4 | 0.064 | 0.046 | 1.374 | 246 | Q99N50 | 5.69E-34 | Q99N50 | 1.06E-19 |
| tfiia-alpha and beta-like factor | 0.034 | 0.023 | 1.444 | 339 | Q9UNN4 | 1.80E-32 | Q9UNN4 | 2.87E-23 |
| tho complex subunit 1 | 0.033 | 0.027 | 1.21 | 291 | Q96FV9 | 2.55E-68 | Q96FV9 | 1.49E-42 |
| torsin-1b | 0.09 | 0.011 | 8.023 | 258 | O14657 | 4.26E-38 | O14657 | 7.91E-07 |
| transcription initiation factor tfiid subunit 12 | 0.013 | 0.01 | 1.259 | 501 | Q3T174 | 3.39E-61 | Q3T174 | 1.90E-29 |
| translin | 0.008 | 0.008 | 1.068 | 486 | Q62348 | 2.08E-78 | Q62348 | 9.20E-58 |
| transmembrane protein 106b | 0.019 | 0.011 | 1.817 | 360 | Q1LWC2 | 1.23E-18 | Q1LWC2 | 1.28E-25 |
| transmembrane protein 50a | 0.053 | 0.035 | 1.518 | 279 | O95807 | 1.58E-65 | O95807 | 3.27E-37 |
| trna guanosine-2 -o-methyltransferase trm11 homolog | 0.036 | 0.021 | 1.704 | 285 | Q05B63 | 2.25E-57 | Q7TNK6 | 7.43E-34 |
| tumor necrosis factor ligand superfamily member 10 | 0.151 | 0.127 | 1.186 | 309 | P50591 | 2.46E-15 | P50591 | 1.43E-08 |
| tumor necrosis factor receptor superfamily member | 0.12 | 0.105 | 1.14 | 309 | Q92956 | 2.24E-28 | Q92956 | 6.81E-13 |
| ubiquilin-4 | 0.042 | 0.034 | 1.234 | 384 | Q99NB8 | 8.99E-31 | Q5R684 | 3.98E-27 |
| ubiquitin fusion degradation protein 1 homolog | 0.011 | 0.01 | 1.05 | 378 | Q9ES53 | 2.56E-98 | Q9ES53 | 3.51E-78 |
| ubiquitin-conjugating enzyme e2 n | 0.182 | 0.136 | 1.342 | 171 | Q9EQX9 | 8.30E-36 | Q9EQX9 | 3.51E-07 |
| ubiquitin-like modifier-activating enzyme atg7 | 0.031 | 0.013 | 2.269 | 276 | O95352 | 4.22E-63 | Q5ZKY2 | 6.44E-33 |
| upf0420 protein c16orf58 | 0.034 | 0.029 | 1.188 | 435 | Q96GQ5 | 3.11E-40 | Q499P8 | 5.73E-29 |
| vacuolar protein sorting-associated protein 16 homolog | 0.016 | 0.012 | 1.312 | 477 | Q5E9L7 | 2.96E-110 | Q5E9L7 | 1.89E-91 |
| wd repeat-containing protein 5 | 0.121 | 0.08 | 1.513 | 288 | Q2KIG2 | 2.23E-27 | Q2KIG2 | 3.23E-45 |
| zinc finger cchc domain-containing protein 4 | 0.044 | 0.02 | 2.155 | 450 | Q66IH9 | 2.42E-67 | Q6DCD7 | 1.19E-33 |
| zinc finger hit domain-containing protein 3 | 0.01 | 0.009 | 1.194 | 408 | Q9CQK1 | 4.83E-24 | Q15649 | 8.10E-24 |
| zona pellucida sperm-binding protein 4 flags: precursor | 0.048 | 0.042 | 1.136 | 402 | Q12836 | 1.35E-22 | Q12836 | 1.78E-18 |
Bold face indicates a significant Fisher’s exact test (p-value < 0.05)