. 2015 Sep 2;16(1):660. doi: 10.1186/s12864-015-1878-5

Table 5.

Identification of candidate diagnostic markers through genotyping sequence-defined markers with whole genome sequencing data from 10 cultivars on genetic linkage map flanking the R gene PhtjR conferring resistance to phomopsis in Lupinus angustifolius

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^aMarkers showing genotypes completely consistent with PSB disease phenotypes on all 10 cultivars are considered candidate diagnostic markers and are highlighted in green

^bTwo nucleotides separated by a stroke line in brackets are SNP markers; nucleotides in brackets without a stroke line are InDel markers

^cMarker positions are the nucleotide positions on the reference genome sequence assembly from cultivar Tanjil (Genbank BioProject number PRJNA179231)

^dMarkers showing R-allele genotype on cultivars without the R gene Phtj (false positives) are highlighted in red

^eMarker sequences missing in genome re-sequencing were recorded as missing data “-”

^fGenotypes of R gene PhtjR on sequenced cultivars presented in blue: R = presence of PhtjR gene; S = absence of PhtjR gene [44]