Table 3. qPCR analysis of human podocyte gene expression: Verification of selected microarray results.
Gene Symbol | Gene Title | PAN+MeOH vs. MeOH | PAN+EV vs. PAN+MeOH | Function | ||||
---|---|---|---|---|---|---|---|---|
FC | p-value | FC Array* | FC | p-value | FC Array* | |||
COL4A3 | Collagen, type IV, alpha 3 | -1.3 | ns | -4.8 | 2.6 | 0.002 | 3.3 | extracellular matrix composition |
DCDC2 | Doublecortin domain containing 2 | -3.9 | 0.001 | -6.6 | 2.4 | 0.004 | 2.3 | cytoskeletal organization / stability, migration |
FN1 | Fibronectin 1 | -2.0 | 0.03 | -1.8 | -1.0 | ns | 1.5 | adhesion, migration |
LPXN | Leupaxin | 5.6 | 0.01 | 2.4 | -2.2 | 0.03 | -2.2 | adhesion, migration |
MMP24 | Matrix metallopeptidase 24 | -1.6 | 0.01 | -2.4 | 3.0 | ns | 1.6 | migration |
MYLIP | Myosin regulatory light chain interacting protein | 15.7 | 0.01 | 5.3 | -2.3 | 0.04 | -2.6 | cytoskeletal organization / stability |
MYO5C | Myosin VC | -4.1 | 0.002 | -5.8 | 2.8 | 0.009 | 2.3 | cytoskeletal organization / stability |
NRG1 | Neuregulin 1 | -1.6 | ns | -3.2 | 1.2 | ns | 2.1 | adhesion |
PCDH10 | Protocadherin 10 | 71.1 | 0.009 | 13.9 | -4.6 | 0.01 | -4.9 | adhesion |
PCDH17 | Protocadherin 17 | 371.4 | 0.005 | 17.7 | -12.0 | 0.006 | -10.5 | adhesion |
PCDH9 | Protocadherin 9 | 32.7 | 0.02 | 9.5 | -6.7 | 0.02 | -5.7 | adhesion |
SYNPO2 | Synaptopodin 2 | 1.9 | ns | 2.1 | -2.4 | 0.04 | -3.0 | cytoskeletal organization / stability |
TGFB1I1 | Transforming growth factor beta 1 induced transcript 1 | -1.7 | 0.05 | -5.1 | 2.9 | 0.008 | 2.0 | adhesion |
THBS1 | Thrombospondin 1 | -10.8 | 0.0003 | -13.5 | 2.5 | 0.03 | 2.5 | adhesion |
TUBA1A | Tubulin, alpha 1a | -3.8 | 0.0001 | -2.9 | 1.6 | 0.03 | 2.0 | cytoskeletal organization / stability |
TUBB | Tubulin, beta class I | -3.9 | 0.0007 | -5.5 | 2.2 | 0.004 | 2.0 | cytoskeletal organization / stability |
TUBB2B | tubulin, beta 2B class 2b | -13.5 | 0.00008 | -19.0 | 5.8 | 0.003 | 4.2 | cytoskeletal organization / stability |
PAN = puromycin aminonucleoside. EV = everolimus. MeOH = methanol, solvent for EV. p = p-value. FC = fold change.
* = p < 0.05.