Table 5. Genes implicated as having genetic variants affecting polysomal loading (either directly or via RNA isoforms) were tested for associations with clinical phenotypes (all GWAS from dbGaP) and eQTLs.
Allelic ratio | ||||||
---|---|---|---|---|---|---|
Gene ID | Gene name | Cytosol | Polysomes | GWAS catalog | eQTL | References |
ENSG00000154945.6 | ANKRD40 | 2.4 | 1 | x | [30] | |
ENSG00000131100.8 | ATP6V1E1 | 2.8 | 1.2 | x | [30] | |
ENSG00000122515.10 | ZMIZ2 | 2.3 | 1.1 | x * | [29] | |
ENSG00000184661.9 | CDCA2 | 1.1 | 2.2 | x * | [29] | |
ENSG00000170779.10 | CDCA4 | 2.2 | 1 | x * | [29] | |
ENSG00000139624.8 | CERS5 | 2.2 | 1.3 | x * | [29, 30] | |
ENSG00000080819.2 | CPOX | 3.1 | 1.2 | x * | [29] | |
ENSG00000241258.2 | CRCP | 2 | 1.7 | x * | x * | [29, 31] |
ENSG00000079459.8 | FDFT1 | 2 | 1.2 | x | x | [30, 32, 33] |
ENSG00000109536.7 | FRG1 | 1 | 2.7 | x | x | [30, 34] |
ENSG00000125166.8 | GOT2 | 1.3 | 2.6 | x | x | [31, 35] |
ENSG00000107521.14 | HPS1 | 2 | 1.1 | x | [30] | |
ENSG00000113013.8 | HSPA9 | 1.2 | 1.7 | x * | [29] | |
ENSG00000161405.12 | IKZF3 | 1.2 | 1.7 | x * | x * | [29, 36–43] |
ENSG00000100605.12 | ITPK1 | 2.6 | 1.3 | x | x | [30, 44–46] |
ENSG00000226025.5 | LGALS17A | 1.7 | 3.6 | x | x | [47] |
ENSG00000135363.7 | LMO2 | 1.2 | 1.7 | x | [48] | |
ENSG00000054219.9 | LY75 | 4.0 | 1.8 | x | x | [30, 49] |
ENSG00000172172.3 | MRPL13 | 2.3 | 1.6 | x * | [29] | |
ENSG00000137409.14 | MTCH1 | 3 | 1.3 | x | [30] | |
ENSG00000198793.8 | MTOR | 3 | 1.1 | x | x | [30, 50] |
ENSG00000164346.5 | NSA2 | 1.2 | 2.5 | x * | [29, 30] | |
ENSG00000078674.13 | PCM1 | 1.1 | 1.4 | x | x | [30, 51] |
ENSG00000122512.10 | PMS2 | 1.3 | 1.8 | x * | [29, 30] | |
ENSG00000123892.7 | RAB38 | 1 | 2.4 | x | x * | [29, 30, 52] |
ENSG00000029725.12 | RABEP | 2.7 | 1.1 | x | [30] | |
ENSG00000168421.7 | RHOH | 1.1 | 1.7 | x | [53] | |
ENSG00000132383.7 | RPA1 | 4.2 | 1 | x | [30] | |
ENSG00000163902.7 | RPN1 | 2 | 1.2 | x | x * | [29, 54, 55] |
ENSG00000213445.4 | SIPA1 | 2.8 | 1.3 | x | [30] | |
ENSG00000140199.7 | SLC12A6 | 1.2 | 1.4 | x * | [29, 30] | |
ENSG00000136738.10 | STAM | 1 | 2.6 | x | [30] | |
ENSG00000006114.11 | SYNRG | 2.6 | 1.5 | x | x | [30, 56] |
ENSG00000136270.9 | TBRG4 | 2.7 | 1.4 | x * | [29] | |
ENSG00000183864.4 | TOB2 | 1.3 | 2.3 | x | [57] | |
ENSG00000105939.8 | ZC3HAV1 | 1.2 | 1.7 | x * | [29] | |
ENSG00000183309.7 | ZNF623 | 1.5 | 1.8 | x * | [29] |
*The same SNP implicated in allelic RNA analysis in polysomes is also identified as a candidate variant in the databases.