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. 2015 Mar 20;6(17):15265–15282. doi: 10.18632/oncotarget.3317

Primers for Pyrosequencing.

Target Primer sequences Position Refseq (NCBI)
CDH1 Hs_CDH1_02_PMPyroMarkCPGassay PM00171948 chr16: 68772100-68772129
CDKN2B Hs_CDKN2B_01_PMPyroMarkCPGassay PM00039893 chr9: 22008945-22008981
LINE-1 sense 5ʹ-GGGTTTATTTTATTAGGGAGTGTTAGAT-3ʹ
reverse-biotin 5ʹ-AAAAAAACTCCCTAACCCCTTAC-3ʹ
sequencing 5ʹ-AGTGGGAGTAGGTTAGT-3ʹ
Repeated sequences
AluSc sense 5ʹ-AGAGATAGAGATTATTTTGGTTAATATGG-3ʹ
reverse-biotin 5ʹ-AATTCAAACCATTCTCCTACCTCAAC-3ʹ
sequencing 5ʹ-ATTAAAAATATAAAAATTAGTTGG-3ʹ
Repeated sequences
TP73 Hs_TP73_02_PMPyroMarkCPGassay PM00084868 chr1: 3607097-3607129

Localization of the primers is reported in Supplementary Figures S8, S10 and S11.