Table 1. The Number of Interaction Pairs with a Rate Coefficient of over 0.6 within Corresponding Genes Estimated by Three Mirror Tree Methods.
|
dN |
dS |
|||||
|---|---|---|---|---|---|---|
| Interactionsa | ρava | ρavs | ρpca | ρava | ρavs | ρpca |
| RNAP-RNAP (6) | 5 | 3 | 5 | 3 | 0 | 2 |
| RNAP-sig1 (4) | 1 | 2 | 3 | 0 | 0 | 0 |
| RNAP-sig2 (4) | 1 | 2 | 3 | 0 | 0 | 0 |
| RNAP-sig3 (4) | 0 | 0 | 0 | 0 | 1 | 0 |
| RNAP-sig4 (4) | 0 | 0 | 0 | 0 | 0 | 0 |
| RNAP-sig5 (4) | 0 | 0 | 0 | 0 | 0 | 0 |
| RNAP-sig6 (4) | 0 | 0 | 0 | 0 | 0 | 0 |
| RNAP-control (80) | 0 | 0 | 0 | 10 | 0 | 8 |
| sig1-control (20) | 0 | 0 | 1 | 4 | 0 | 3 |
| sig2-control (20) | 0 | 0 | 0 | 5 | 0 | 4 |
| sig3-control (20) | 8 | 5 | 1 | 3 | 5 | 3 |
| sig4-control (20) | 11 | 0 | 0 | 5 | 1 | 2 |
| sig5-control (20) | 0 | 0 | 0 | 8 | 0 | 5 |
| sig6-control (20) | 1 | 0 | 0 | 10 | 0 | 9 |
RNAP contains rpoA, rpoB, rpoC1, and rpoC2. Results of the average by all method (ρava), average by separation method (ρavs), and PCA method (ρpca) are shown.
a
The number in parentheses is the total number of interaction pairs within corresponding genes.