Table 1.
Summary of Genes Retained in Sciaphila Relative to Carludovica
| Function | Carludovica palmata | Sciaphila densiflora |
|---|---|---|
| Photosynthesis | psaA, psaB, psaC, psaI, psaJ | — |
| psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | — | |
| atpA, atpB, atpE, atpF, atpH, atpI | — | |
| petA, petB, petD, petG, petL, petN | — | |
| rbcL | — | |
| ycf3, ycf4 | — | |
| ndhA, ndhB, ndhC, ndhD, ndhE | — | |
| ndhF, ndhG, ndhH, ndhI, ndhJ | ||
| ndhK | ||
| Ribosomal proteins | rpl2, rpl14, rpl16, rpl20, rpl22, rpl23 | rpl2, rpl14, rpl16, rpl20, rpl36 |
| rpl32, rpl33, rpl36 | ||
| rps2, rps3, rps4, rps7, rps8, rps11 | rps2, rps3, rps4, rps7, rps8, rps11 | |
| rps12, rps14, rps15, rps16, rps18, rps19 | rps12, rps14, rps18, rps19 | |
| RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | — |
| rDNAs | rrn4.5, rrn5, rrn16, rrn23 | rrn4.5, rrn5, rrn16, rrn23 |
| tRNAs | trnA-UGC, trnC-GCA, trnD-GUC | trnC-GCA, trnE-UUC, trnfM-CAU |
| trnE-UUC, trnF-GAA, trnfM-CAU | trnI-CAU, trnQ-UUG, trnW-CCA | |
| trnG-GCC, trnG-UCC, trnH-GUG | ||
| trnI-CAU, trnI-GAU, trnK-UUU | ||
| trnL-CAA, trnL-UAA, trnL-UAG | ||
| trnM-CAU, trnN-GUU, trnP-UGG | ||
| trnQ-UUG, trnR-ACG, trnR-UCU | ||
| trnS-GCU, trnS-GGA, trnS-UGA | ||
| trnT-GGU, trnT-UGU, trnV-GAC | ||
| trnV-UAC, trnW-CCA, trnY-GUA | ||
| Other protein-coding genes | accD, ccsA, cemA, clpP, infA, matK | accD, clpP, matK |
| ycf1, ycf2 |
Note.—Dash (—) indicates the absence of all genes for that protein complex.