Table 1.
Genomic Features of BFo Bacteria and Closely Related Species
| Species | Estimated Genome Size (Mb) | Average Whole-Genome GC Content (% mol) | No. Genes | Predicted Pseudogenes | Total RNAs | Plasmids | Status | Source | GenBank Accession | Plasmid(s) Accession |
|---|---|---|---|---|---|---|---|---|---|---|
| BFo | ||||||||||
| BFo1 (Netherlands) | 5.13 | 51.82 | 4,829 | 98 | 76 | — | Draft | This study | JMS00000000 | — |
| BFo1 SwAb130 (Netherlands) | 5.17 | 54.59 | 4,914 | 264 | 75 | — | Draft | This study | LAGP00000000 | — |
| BFo1 Keele2 (UK) | 5.01 | 54.41 | 4,670 | 252 | 63 | — | Draft | This study | LAGQ00000000 | — |
| BFo2 Swan1 (Netherlands) | 3.10 | 45.72 | 3,068 | 101 | 53 | — | Draft | This study | JMSP00000000 | — |
| BFo2 Swan69 (Netherlands) | 3.24 | 46.34 | 3,136 | 185 | 61 | — | Draft | This study | LAGS00000000 | — |
| BFo2 Keele1 (UK) | 2.70 | 46.9 | 2,681 | 128 | 45 | — | Draft | This study | LAGR00000000 | — |
| Erwinia | ||||||||||
| E. amylovora ATCC49946 | 3.81 | 53.6 | 3,583 | 46 | 100 | 2 | Complete | Sebaihia et al. (2010) | NC_013971 | NC_013972.1; NC_13973.1 |
| E. amylovora CFBP1430 | 3.83 | 53.6 | 3,455 | 21 | 100 | 1 | Complete | Smits et al. (2010b) | NC_013961 | NC_013957.1 |
| E. amylovora LA637 | 3.87 | 53.7 | 3,565 | 2 | 58 | 2 | Draft | Unpublished | NZ_CBVU000000000 | NC_023056.1; NC_023072.1 |
| E. amylovora LA636 | 3.79 | 53.6 | 3,471 | 2 | 58 | — | Draft | Unpublished | NZ_CBVT000000000 | — |
| E. amylovora ACW56400 | 3.86 | 53.5 | 3,909 | 13 | 66 | 1 | Draft | Unpublished | NZ_AFHN00000000 | NC_018999.1 |
| E. pyrifoliae Ep1/96 | 4.07 | 53.4 | 3,728 | 50 | 97 | 4 | Complete | Kube et al. (2010) | NC_012214 | NC_013264.1/FP236827.1; NC_013265.1/FP236828.1; NC_013954.1/FP928999.1; NC_013263.1/FP236829.1 |
| E. pyrifoliae DSM 12163 | 4.07 | 53.4 | 3,725 | 75 | 97 | 4 | Complete | Smits et al. (2010a) | NC_017390 | NC_017391.1/FN392236.1; NC_017388.1/FN392237.2; NC_017392.1/FN392238.1; NC_017389.1/FN392239.1 |
| E. tasmaniensis Et1/99 | 4.07 | 53.4 | 3,721 | 57 | 103 | 5 | Complete | Kube et al. (2010) | NC_010694 | NC_010695.1; NC_010696.1; NC_10697.1; NC_010699.1; NC_010693.1 |
| E. toletana DAPP-PG 735 | 5.27 | 53.6 | 4,812 | 48 | 50 | — | Draft | Passos da Silva et al. (2013) | NZ_AOCZ00000000 | — |
| E. billingiae Eb661 | 5.37 | 55 | 4,928 | 39 | 98 | 2 | Complete | Kube et al. (2010) | NC_014306 | NC_014304.1; NC_014305.1 |
| E. billingiae Ep1/96 | 4.00 | 53.4 | 3,645 | 57 | 82 | 4 | Complete | Kube et al. (2010) | FP_236843 | FP_928999; FP236827; FP236828; FP236829 |
| E. tracheiphila PSU-1 | 4.72 | 50.1 | 4,314 | 487 | 54 | — | Draft | Unpublished | NZ_APJK00000000 | — |
| Pantoea | ||||||||||
| Pantoea dispersa EGD-AAK13 | 4.77 | 57.8 | 4,382 | 15 | 71 | — | Draft | Unpublished | NZ_AVSS00000000 | — |
| P. sp. At-9b | 6.31 | 54.3 | 6,008 | — | 107 | 5 | Complete | Unpublished | NC_014837 | NC_014838.1–NC_01482.1 |
| P. agglomerans IG1 | 4.83 | 55 | 4,443 | 32 | 65 | — | Draft | Matsuzawa et al. (2012) | NZ_BAEF00000000 | — |
| P. agglomerans 299R | 4.58 | 54.3 | 4,320 | 41 | 90 | — | Draft | Remus-Emsermann et al. (2013) | NZ_ANKX00000000 | — |
| P. agglomerans Tx10 | 4.86 | 55.1 | 4,482 | 17 | 95 | — | Draft | Smith et al. (2013a) | NZ_ASJI00000000 | — |
| P. agglomerans Eh318 | 5.04 | 54.8 | 4,791 | 55 | 101 | — | Draft | Unpublished | NZ_AXOF00000000 | — |
| P. agglomerans strain 190 | 5.00 | 55.1 | 4,621 | 58 | 101 | — | Draft | Lim et al. (2014) | JNGC00000000 | — |
| P. agglomerans RIT273 | 5.37 | 55.1 | 4,927 | 32 | 93 | — | Draft | Unpublished | NZ_JFOK00000000 | — |
| P. agglomerans DAPP-PG734 | 5.37 | 54.7 | 5,107 | 57 | 106 | — | Draft | Moretti et al. (2014) | NZ_JNVA00000000 | — |
| P. agglomerans strain 4 | 4.81 | 55.1 | 4,370 | 37 | 70 | — | Draft | Unpublished | JPOT00000000 | — |
| P. vagans C9-1 | 4.89 | 55.1 | 4,512 | 101 | 99 | 2 | Complete | Smits et al. (2010c) | NC_014562 | NC_014561.1/CP001893.1; NC_014563.1/CP001894.1 |
| P. vagans MP7 | 4.59 | 55.3 | 4,125 | — | — | — | Draft | Unpublished | N/A | — |
| P. ananatis LMG 5342 | 4.91 | 53.3 | 4,525 | 70 | 99 | 1 | Draft | De Maayer et al. (2012) | NC_016816 | NC_016817.1/HE617161.1 |
| P. ananatis LMG2665 | 4.98 | 53.4 | 4,624 | 47 | 88 | — | Draft | Adam et al. (2014) | NZ_JFZU00000000 | — |
| P. ananatis AJ13355 | 4.88 | 53.7 | 4,138 | 1 | Complete | Hara et al. (2012) | NC_017531.1 | NC_017533.1/AP012033.1 | ||
| P. ananatis BI-9 | 5.11 | 53.5 | 4,759 | 32 | 75 | — | Draft | Kim et al. (2012) | NZ_CAEI00000000 | — |
| P. ananatis DAR76143 | 5.25 | 53.4 | 4,914 | 792 | 64 | — | Draft | Unpublished | NZ_BATH00000000 | — |
| P. ananatis Sd-1 | 4.92 | 53.3 | 4,548 | 72 | 73 | — | Draft | Unpublished | GCF_000582575.1 | — |
| P. ananatis BRT175 | 4.85 | 53,.7 | 4,696 | 38 | 95 | — | Draft | Smith et al. (2013b) | NZ_ASJH00000000 | — |
| Tatumella | ||||||||||
| Tatumella ptyseos ATCC 33301 | 3.53 | 51.6 | 3,349 | — | — | — | Draft | Tracz et al. (2015) | ATMJ00000000.1 | — |
| Other | ||||||||||
| Plautia stali symbiont | 3.77 | 57 | 4,062 | 1,202 | 75 | 2 | Complete | Kobayashi et al. (2011) | NC_022546 | NC_022533.1; NC_022534.1 |
Note.—Genomic features of BFo bacteria and a comparison with representative individuals from closely related species. Table includes species from the genus Erwinia, Pantoea, and Tatumella and also includes the closely related symbiont from Plautia stali. Table shows genome size (Mb), number of plasmids (along with GenBank accession number), average whole-genome G+C content, number of genes, pseudogenes, and RNAs. Total RNAs do not include noncoding RNAs. An indication of the sequencing status of the genome is also given. For BFo bacteria, origin of F. occidentalis population, where isolated, is given in parenthesis along with GenBank accession numbers. “—” indicates value unknown.