Table 3.

Number of Differentially Expressed Transcripts

	FDR < 0.05				FDR = 0.00
	FPKM	TPM	Shared	Total	FPKM	TPM	Shared	Total
Tot. DE	686	858	6,666	8,210	266	1,187	3,667	5,120
Tot. PIT	402	349	1,688	2,439	–	–	–	–
Tot. DE PIT	359	368	1,611	2,338	173	403	847	1,423
Upreg. DE PIT	181	152	605	938	80	168	244	492

Note.—FPKM and TPM columns correspond to the number of transcripts unique to that data set. Upreg. DE PIT, counts for transcripts specific to one of the conditions of interest shown in footnote b in table 1.