Table 1.
Point Estimates and Number of Loci (N) for Divergence and Diversity (%) Measures across Groups of Genomic Elements and Divergence Ratios (Ratio of Median Divergence across Loci to Median Divergence at ARs)
| Genomic Element (N Loci) | Tajima’s D | d | π (%) | π/d | d/dAR |
|---|---|---|---|---|---|
| ARs | −0.494 | 0.154 | 0.897 | 5.82 | — |
| (243,140) | (−0.500, −0.487) | (0.154, 0.154) | (0.893, 0.900) | (5.80, 5.84) | |
| PC Exons | −0.734 | 0.0800 | 0.351 | 4.39 | 0.540 |
| (49,470) | |||||
| Known lncRNAs | −0.859* | 0.122* | 0.532* | 4.38* | 0.797 |
| (74) | (−1.03, −0.717) | (0.109, 0.130) | (0.436, 0.600) | (3.82, 4.95) | |
| All lncRNAs | −0.542* | 0.141* | 0.800* | 5.68* | 0.951 |
| (10,088) | (−0.559, −0.526) | (0.140, 0.142) | (0.790, 0.808) | (5.61, 5.74) | |
| Intergenic lncRNAs | −0.541 | 0.142 | 0.815 | 5.75 | 0.958 |
| (8,433) | (−0.558, −0.522)* | (0.141, 0.143)* | (0.805, 0.827)* | (5.68, 5.83) | |
| Intronic lncRNAs | −0.507 | 0.140 | 0.779 | 5.61 | 0.937 |
| (940) | (−0.565, −0.443) | (0.137, 0.141)* | (0.750, 0.806)* | (5.41, 5.82) |
Note.—Bootstrapped 95% confidence intervals are given in brackets. Age group-specific estimates of diversity measures with significantly different distribution of values, after a Bonferroni correction, when compared with the bootstrap distribution of ARs are denoted with * (actual P values are reported in supplementary table S5, Supplementary Material online).