Skip to main content
. 2015 Aug 8;7(8):2362–2382. doi: 10.1093/gbe/evv158

Table 1.

Raw Read Realignment Statistics for mtDNA and wAna Genomes

Strain Total Reads wAna Originating Reads Proportion of wAna Reads wAna RDavg wAna Ratio mtDNA Originating Reads Proportion of mtDNA Reads mtDNA RDavg mtDNA Ratio
Raw reads from wAnaITG genome
    BKK13 35,914,931 721,253 0.020 74.4 2.5 238,401 0.003 2,376.8 78.5
    D38 40,631,930 987,102 0.024 101.8 3.1 299,310 0.007 2,977.6 89.6
    EZ104 29,830,655 613,044 0.021 63.2 2.6 216,173 0.007 2,150.7 86.7
    PNP1 90,416,482 1,766,984 0.020 180.3 2.4 291,938 0.003 2,681.3 35.1
    TB43 28,871,004 621,913 0.022 64.0 2.7 208,458 0.007 2,071.6 87.2
    TBU3 39,325,872 1,001,506 0.025 103.4 3.2 292,405 0.007 2,908.0 89.1
    TI8 37,948,414 853,466 0.022 88.0 2.8 265,647 0.007 2,645.9 83.2
    Median 37,948,414 853,466 0.022 88.0 2.7 265,647 0.007 2,645.9 86.7
Raw reads from wAnaINF genome
    Cebu 141,458,302 2,971,843 0.021 304.7 2.6 528,382 0.004 5,262.5 44.6
    GB1 33,180,346 640,906 0.019 64.3 2.6 228,571 0.007 2,121.2 86.7
    HNL0501 19,121,957 243,774 0.013 24.9 1.7 101,483 0.005 1,008.5 68.3
    KMJ1 76,690,462 1,457,894 0.019 149.2 2.3 208,845 0.003 1,894.7 28.9
    OGS98-K1 30,352,531 709,801 0.023 72.1 3.3 78,842 0.003 784.6 35.6
    RC102 82,433,612 1,387,896 0.017 141.5 2.1 246,883 0.003 2,258.8 32.8
    TBU136 20,721,322 794,974 0.038 81.3 5.2 81,676 0.004 811.3 51.5
    VAV150 20,791,631 535,975 0.026 54.4 3.5 122,822 0.006 1,153.5 75.2
    Median 31,766,439 752,388 0.020 76.7 2.6 165,834 0.004 1,524.1 48.1

Note.—RDavg, average read depth of a sample; Ratio, value obtained by dividing the mean depth of the wAna or mtDNA genome to the mean depth of D. ananassae nuclear genome (scaffold 13370).