Table 1.
Strain | Total Reads | wAna Originating Reads | Proportion of wAna Reads | wAna RDavg | wAna Ratio | mtDNA Originating Reads | Proportion of mtDNA Reads | mtDNA RDavg | mtDNA Ratio |
---|---|---|---|---|---|---|---|---|---|
Raw reads from wAnaITG genome | |||||||||
BKK13 | 35,914,931 | 721,253 | 0.020 | 74.4 | 2.5 | 238,401 | 0.003 | 2,376.8 | 78.5 |
D38 | 40,631,930 | 987,102 | 0.024 | 101.8 | 3.1 | 299,310 | 0.007 | 2,977.6 | 89.6 |
EZ104 | 29,830,655 | 613,044 | 0.021 | 63.2 | 2.6 | 216,173 | 0.007 | 2,150.7 | 86.7 |
PNP1 | 90,416,482 | 1,766,984 | 0.020 | 180.3 | 2.4 | 291,938 | 0.003 | 2,681.3 | 35.1 |
TB43 | 28,871,004 | 621,913 | 0.022 | 64.0 | 2.7 | 208,458 | 0.007 | 2,071.6 | 87.2 |
TBU3 | 39,325,872 | 1,001,506 | 0.025 | 103.4 | 3.2 | 292,405 | 0.007 | 2,908.0 | 89.1 |
TI8 | 37,948,414 | 853,466 | 0.022 | 88.0 | 2.8 | 265,647 | 0.007 | 2,645.9 | 83.2 |
Median | 37,948,414 | 853,466 | 0.022 | 88.0 | 2.7 | 265,647 | 0.007 | 2,645.9 | 86.7 |
Raw reads from wAnaINF genome | |||||||||
Cebu | 141,458,302 | 2,971,843 | 0.021 | 304.7 | 2.6 | 528,382 | 0.004 | 5,262.5 | 44.6 |
GB1 | 33,180,346 | 640,906 | 0.019 | 64.3 | 2.6 | 228,571 | 0.007 | 2,121.2 | 86.7 |
HNL0501 | 19,121,957 | 243,774 | 0.013 | 24.9 | 1.7 | 101,483 | 0.005 | 1,008.5 | 68.3 |
KMJ1 | 76,690,462 | 1,457,894 | 0.019 | 149.2 | 2.3 | 208,845 | 0.003 | 1,894.7 | 28.9 |
OGS98-K1 | 30,352,531 | 709,801 | 0.023 | 72.1 | 3.3 | 78,842 | 0.003 | 784.6 | 35.6 |
RC102 | 82,433,612 | 1,387,896 | 0.017 | 141.5 | 2.1 | 246,883 | 0.003 | 2,258.8 | 32.8 |
TBU136 | 20,721,322 | 794,974 | 0.038 | 81.3 | 5.2 | 81,676 | 0.004 | 811.3 | 51.5 |
VAV150 | 20,791,631 | 535,975 | 0.026 | 54.4 | 3.5 | 122,822 | 0.006 | 1,153.5 | 75.2 |
Median | 31,766,439 | 752,388 | 0.020 | 76.7 | 2.6 | 165,834 | 0.004 | 1,524.1 | 48.1 |
Note.—RDavg, average read depth of a sample; Ratio, value obtained by dividing the mean depth of the wAna or mtDNA genome to the mean depth of D. ananassae nuclear genome (scaffold 13370).