Table 4.
Phasing Sites Called as Heterozygotes from the Diploid wAnaITG Genomes
| Sample | Diploid | Haploid |
|
|---|---|---|---|
| Het Variant | Unphased | Phased | |
| BKK13 | 511 | 480 (93.9%) | 31 (6.1%) |
| D38 | 466 | 435 (93.3%) | 31 (6.7%) |
| EZ104 | 493 | 441 (89.5%) | 52 (10.5%) |
| PNP1 | 374 | NA | |
| TB43 | 529 | 483 (91.3%) | 46 (8.7%) |
| TBU3 | 531 | 508 (95.7%) | 23 (4.3%) |
| TI8 | 525 | 501 (95.4%) | 24 (4.6%) |
Note.—Het Variant, total number of sites called as heterozygotes in the diploid wAnaITG genome; Unphased, total number of variants that were called heterozygotes in the diploid wAnaITG genome and were still called as heterozygotes in the haploid wAnaITG genome; Phased, total number of variants that were called heterozygotes in the diploid wAnaITG genome but homozygous as haploid wAnaITG genome; NA, not applicable as the average read coverage was too low to reliably call variants. Proportions are indicated in parenthesis.