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. Author manuscript; available in PMC: 2015 Sep 3.
Published in final edited form as: Genet Epidemiol. 2011;35(0 1):S74–S79. doi: 10.1002/gepi.20654

Table I.

Distribution of causal SNPs by sample

Gene Trait Chromo some Number of SNPsa CCb F1c F2 F3 F4 F5 F6 F7 F8
AKT3 DXd 1 1 1 0 0 0 0 0 0 0 2
ARNT Q1 1 5 23 3 2 0 0 6 0 0 0
BCHE Q2 3 13 19 4 0 0 0 1 0 2 2
BCL2L11 DX 2 3 6 0 0 0 0 0 2 0 0
ELAVL4 Q1, DX 1 2 2 0 0 1 0 0 0 0 0
FLT1 Q1 13 11 170 0 0 5 0 28 16 13 12
FLT4 Q1 5 2 3 0 0 0 0 0 0 0 0
GCKR Q2 2 1 17 2 0 0 0 0 0 0 0
HIF1A Q1 14 4 22 0 0 0 0 1 0 0 0
HIF3A Q1 19 3 3 0 0 0 0 3 0 0 0
HSP90AA1 DX 14 4 367 61 78 74 64 59 65 115 60
INSIG1 Q2 7 3 3 0 0 0 0 0 0 0 0
KDR Q1 4 10 271 14 37 43 31 6 0 93 0
LPL Q2 8 3 25 7 20 2 1 0 1 23 7
NRAS DX 1 1 1 0 0 0 0 0 0 0 0
PDGFD Q2 11 4 16 0 0 0 0 0 0 2 0
PIK3C2B DX 1 24 62 3 4 8 0 4 6 9 0
PIK3C3 DX 18 2 25 0 0 0 0 2 0 5 0
PIK3R3 DX 1 1 1 0 0 0 0 0 0 0 0
PLAT Q2 8 8 23 0 1 2 0 0 3 0 0
PRKCA DX 17 2 233 53 57 70 51 29 47 48 60
PRKCB1 DX 16 1 1 0 0 0 0 0 0 0 0
PTK2 DX 8 2 2 0 0 0 0 0 0 0 0
PTK2B DX 8 3 5 0 0 0 0 0 0 0 0
RARB Q2 3 2 8 0 0 0 0 0 0 0 0
RRAS DX 19 2 4 0 0 0 0 0 2 1 0
SHC1 DX 1 1 9 0 0 0 0 0 0 0 0
SIRT1 Q2 10 8 12 0 0 3 0 0 4 21 0
SOS2 DX 14 2 6 0 0 0 0 0 0 0 0
SREBF1 Q2 17 10 31 16 21 0 5 9 12 8 0
VEGFA Q1 6 1 3 4 20 0 0 0 0 22 0
VEGFC Q1 4 1 1 0 0 0 0 0 0 31 0
VLDLR Q2 9 8 14 2 0 0 0 11 0 6 0
VNN1 Q2 6 2 246 35 60 27 15 24 17 77 0
VNN3 Q2 6 7 201 24 17 27 0 21 0 42 42
VWF Q2 12 2 9 0 0 0 2 0 0 0 0
a

Number of variants within the gene that influence the trait.

b

Number of causal variants observed in the unrelated sample.

c

F1 to F8 are the number of causal variants observed in each family (Family 1 through Family 8).

d

DX is diagnosis, that is, presence or absence of a discrete phenotype.