Table I.
Gene | Trait | Chromo some | Number of SNPsa | CCb | F1c | F2 | F3 | F4 | F5 | F6 | F7 | F8 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
AKT3 | DXd | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
ARNT | Q1 | 1 | 5 | 23 | 3 | 2 | 0 | 0 | 6 | 0 | 0 | 0 |
BCHE | Q2 | 3 | 13 | 19 | 4 | 0 | 0 | 0 | 1 | 0 | 2 | 2 |
BCL2L11 | DX | 2 | 3 | 6 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 |
ELAVL4 | Q1, DX | 1 | 2 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
FLT1 | Q1 | 13 | 11 | 170 | 0 | 0 | 5 | 0 | 28 | 16 | 13 | 12 |
FLT4 | Q1 | 5 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GCKR | Q2 | 2 | 1 | 17 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
HIF1A | Q1 | 14 | 4 | 22 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
HIF3A | Q1 | 19 | 3 | 3 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
HSP90AA1 | DX | 14 | 4 | 367 | 61 | 78 | 74 | 64 | 59 | 65 | 115 | 60 |
INSIG1 | Q2 | 7 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
KDR | Q1 | 4 | 10 | 271 | 14 | 37 | 43 | 31 | 6 | 0 | 93 | 0 |
LPL | Q2 | 8 | 3 | 25 | 7 | 20 | 2 | 1 | 0 | 1 | 23 | 7 |
NRAS | DX | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
PDGFD | Q2 | 11 | 4 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 |
PIK3C2B | DX | 1 | 24 | 62 | 3 | 4 | 8 | 0 | 4 | 6 | 9 | 0 |
PIK3C3 | DX | 18 | 2 | 25 | 0 | 0 | 0 | 0 | 2 | 0 | 5 | 0 |
PIK3R3 | DX | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
PLAT | Q2 | 8 | 8 | 23 | 0 | 1 | 2 | 0 | 0 | 3 | 0 | 0 |
PRKCA | DX | 17 | 2 | 233 | 53 | 57 | 70 | 51 | 29 | 47 | 48 | 60 |
PRKCB1 | DX | 16 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
PTK2 | DX | 8 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
PTK2B | DX | 8 | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
RARB | Q2 | 3 | 2 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
RRAS | DX | 19 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 |
SHC1 | DX | 1 | 1 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SIRT1 | Q2 | 10 | 8 | 12 | 0 | 0 | 3 | 0 | 0 | 4 | 21 | 0 |
SOS2 | DX | 14 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
SREBF1 | Q2 | 17 | 10 | 31 | 16 | 21 | 0 | 5 | 9 | 12 | 8 | 0 |
VEGFA | Q1 | 6 | 1 | 3 | 4 | 20 | 0 | 0 | 0 | 0 | 22 | 0 |
VEGFC | Q1 | 4 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 31 | 0 |
VLDLR | Q2 | 9 | 8 | 14 | 2 | 0 | 0 | 0 | 11 | 0 | 6 | 0 |
VNN1 | Q2 | 6 | 2 | 246 | 35 | 60 | 27 | 15 | 24 | 17 | 77 | 0 |
VNN3 | Q2 | 6 | 7 | 201 | 24 | 17 | 27 | 0 | 21 | 0 | 42 | 42 |
VWF | Q2 | 12 | 2 | 9 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
Number of variants within the gene that influence the trait.
Number of causal variants observed in the unrelated sample.
F1 to F8 are the number of causal variants observed in each family (Family 1 through Family 8).
DX is diagnosis, that is, presence or absence of a discrete phenotype.