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. 2015 Sep 3;16(1):671. doi: 10.1186/s12864-015-1872-y

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© Wen et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — The visualization of the GWAS results and selection signals for selection trait (seed coat color). a Manhattan plots of MLM for seed coat color. The − log10 P-values from a genome-wide scan are plotted against the position on each of the 20 chromosomes. The horizontal red line indicates the genome-wide significance threshold (FDR < 0.05). b Gene diversity (H _i) of genomic regions showing strong association signal on Chromosome 8. c XP-CLR and regional GWAS signals near CHS; gene orientation is indicated by the arrow. d Quantile-quantile (QQ) plot of MLM model for seed coat color