Table 2.
Problems detected by different control probe-sets and their possible reasonsa
Housekeeping genes | Poly-A spike | Bacterial spike | Possible reason |
---|---|---|---|
error | ok | ok | Poor quality of the mRNA analyzed |
error | error | ok | Problems during amplification/labeling |
error | error | error | Problems during hybridization/washing |
ok | ok | error | Inaccurate preparation of bacterial spike |
ok | error | ok | Inaccurate preparation of bacterial poly-A spike |
aOther possible combinations of errors rarely occur in practice