Table 4. Validation of candidate SNPs by KASP marker analysis.

Criterion	Number/ Frequency	KASP assays	Validated SNPs	Validated (%)
Variant reads	4	25	1	4
	5	17	3	18
	6	14	2	14
	7	14	3	21
	8	10	5	50
	9	12	9	75
	>10	35	29	83
Allele frequency	0.2	51	2	4
	0.4	27	13	48
	0.6	18	9	50
	0.8	3	2	67
	1	31	27	87

Candidate SNPs were classified by number of supporting variant reads or by allele frequency and validated by KASP assay.