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. 2015 Sep 4;6:926. doi: 10.3389/fmicb.2015.00926

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Copyright © 2015 García, Alcaraz, Franco and Passerini de Rossi.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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In silico analysis of putative Fur boxes of S. maltophilia K279a iron regulated genes. (A) Upstream regions (−200 to +21) of SMLT_RS06850 and SMLT_RS19685, coding for the outer membrane receptor FepA and a TonB-dependent receptor, respectively. The -35 and -10 sites of the predicted promoters are shown in boxes and the +1 transcription start sites are in bold and underlined. The putative Fur boxes of SMLT_RS06850 (−144 to −125) and SMLT_RS19685 (−175 to −156) are highlighted in yellow. (B) Sequence logo of the putative Fur box of S. maltophilia. Detection of potential Fur boxes present in the genome of S. maltophilia (GenBank: AM743169.1; (Crossman et al., 2008) was performed with 43 Fur boxes previously characterized (Zaini et al., 2008) using MEME tool. A consensus was built from 20 putative S. maltophilia Fur boxes detected with MAST tool.