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. 2015 Sep 4;16:286. doi: 10.1186/s12859-015-0712-z

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© Korir et al. 2015

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Cross-sample correlation with RNA-Seq. For each gene, the cross-sample correlation was determined between the gene expression values estimated from the microarrays using MaLTE, median-polish and PLIER. Density plots show the distribution across genes of (a) Pearson and (b) Spearman correlation coefficients. Mean and median values of the correlation coefficients are provided in parentheses next to the method name in the legend. Vertical lines show mean cross-sample correlation for MaLTE (solid), median-polish (dashed) and PLIER (dotted)