Table 1. Regulon downstream genes.
S. meliloti | Outgroups | ||||
---|---|---|---|---|---|
Regulator | Replicon a | Mean regulon size | MAD b | Mean regulon size | MAD b |
HpdR | Chromosome | 3.10 | 1.0 | 2.4 | 1.0 |
OxyR | Chromosome | 1.71 | 0.0 | 0.0 | 0.0 |
NesR | Chromosome | 8.24 | 1.0 | 6.0 | NA |
AglR | Chromosome | 11.69 | 2.0 | 6.4 | 4.0 |
BetI | Chromosome | 3.22 | 0.0 | 2.2 | 0.0 |
MucR | Chromosome | 5.20 | 1.0 | 2.4 | 0.0 |
NtrR | Chromosome | 1.57 | 2.0 | NA | NA |
ChvI | Chromosome | 3.53 | 1.0 | 0.6 | 0.0 |
SMc04401 | Chromosome | 4.04 | 1.0 | 6.4 | 9.0 |
Fur | Chromosome | 4.45 | 2.0 | 4.5 | 1.0 |
IolR | Chromosome | 41.80 | 10.0 | 45.4 | 7.0 |
RirA | Chromosome | 71.55 | 8.0 | 78.2 | 4.0 |
SMc03165 | Chromosome | 1.69 | 0.0 | 4.4 | 1.0 |
PckR | Chromosome | 69.80 | 13.0 | 45.0 | 3.0 |
GlnBK | Chromosome | 15.35 | 4.0 | 16.2 | 2.0 |
LsrAB1 | Chromosome | 2.86 | 2.0 | 3.4 | 3.0 |
NifA | pSymA | 8.02 | 2.0 | 2.6 | 3.0 |
FixJ | pSymA | 5.86 | 1.0 | 16.5 | NA |
FixK1 | pSymA | 24.27 | 6.0 | 16.8 | 5.0 |
RctR | pSymA | 4.59 | 2.0 | NA | NA |
RhrA | pSymA | 3.79 | 1.0 | NA | NA |
SyrM | pSymA | 1.10 | 0.0 | 1.0 | NA |
NodD1 | pSymA | 6.77 | 2.0 | 10.0 | NA |
NodD2 | pSymA | 6.41 | 2.0 | 17.0 | NA |
NodD3 | pSymA | 6.71 | 2.0 | 6.4 | 2.0 |
RbtR | pSymB | 5.67 | 2.0 | 9.67 | 17.0 |
STM3633 | pSymB | 19.72 | 4.0 | 17.0 | NA |
SM-b20667 | pSymB | 3.18 | 1.0 | 4.0 | 0.0 |
PcaQ | pSymB | 27.82 | 5.0 | 31.2 | 10.0 |
SM-b21706 | pSymB | 0.80 | 0.0 | 3.0 | 2.0 |
DctD | pSymB | 1.24 | 1.0 | 0.0 | 0.0 |
ChpR | pSymB | 1.88 | 0.0 | 0.4 | 0.0 |
ThuR | pSymB | 37.63 | 7.0 | 36.0 | 28.0 |
SM-b21372 | pSymB | 7.33 | 2.0 | 3.5 | 0.0 |
SM-b21598 | pSymB | 3.51 | 1.0 | 3.4 | 1.0 |
YE2053 | pSymB | 19.47 | 4.0 | 13.0 | 6.0 |
RpoE9 | pSymB | 3.35 | 1.0 | 0.0 | 0.0 |
XylR | pSymB | 22.61 | 5.0 | 24.2 | 2.0 |
SM-b20717 | pSymB | 15.24 | 4.0 | 19.25 | 11.0 |
SM-b20537 | pSymB | 7.77 | 3.0 | 12.0 | 1.0 |
ExpG | pSymB | 6.0 | 2.0 | 2.0 | NA |
Regulatory network general statistics over the strains used in this study.
a Position according to the Rm1021 reference strain;
b Mean Absolute Deviation;
NA: not defined.