Extended Data Table 2a. Adaptation experiment with dnaC2 temperature sensitive cells.
E. coli K12 cells were transformed with a pBAD-Cas1+2 vector, in which the Cas1+2 operon is directly controlled by an arabinose-inducible promoter. Following overnight induction by 0.2% L-arabinose and 0.1mM IPTG, the CRISPR array was amplified and sequenced.
Sample | rep | # of reads spanning the CRISPR array | # of reads supporting unmodified parental array | # of reads supporting acquisition of a new spacer | % expanded arrays |
---|---|---|---|---|---|
K-12 ΔcasC 30°C | 1 | 98,884 | 96,299 | 2,585 | 2.61% |
K-12 ΔcasC 30°C | 2 | 117,522 | 115,030 | 2,492 | 2.12% |
K-12 ΔcasC, dnaC2 30°C | 1 | 152,827 | 149,644 | 3,183 | 2.08% |
K-12 ΔcasC, dnaC2 30°C | 2 | 100,125 | 98,053 | 2,072 | 2.07% |
K-12 ΔcasC, 39°C | 1 | 87,036 | 83,688 | 3,348 | 3.85% |
K-12 ΔcasC, 39°C | 2 | 86,580 | 82,474 | 4,106 | 4.74% |
K-12 ΔcasC, dnaC2 39°C | 1 | 66,618 | 66,618 | 0 | 0.00% |
K-12 ΔcasC, dnaC2 39°C | 2 | 60,325 | 60,321 | 4 | 0.01% |