TABLE 3.
Characteristics of the 11 VNTRs for P. syringae pv. actinidiae biovar 3 and and pv. actinidifoliorum strainsa
| VNTR locus |
P. syringae pv. actinidiae biovar 3 (n = 340) |
P. syringae pv. actinidifoliorum (n = 39) |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of haplotypes | Range of repeats | Simpson's index | Allelic richness |
No. of haplotypes | Range of repeats | Simpson's index | Allelic richness | ||||||
| Total (n = 340) | France (n = 264) | Italy (n = 53) | New Zealand (n = 12) | China (n = 8) | Chile (n = 3) | ||||||||
| TR10I | 11 | 7–21 | 0.47 | 7.43 | 2.28 | 2.41 | 1.00 | 3.37 | 1.00 | 10 | 6–16 | 0.90 | 10.0 |
| TR14I | 3 | 5–8 | 0.06 | 2.45 | 1.24 | 1.00 | 1.00 | 1.00 | 1.00 | 5 | 5–9 | 0.44 | 5.00 |
| TR15I | 3 | 2–4 | 0.02 | 1.82 | 1.04 | 1.21 | 1.00 | 1.00 | 1.00 | 1 | 2 | 0.00 | 1.00 |
| TR30I | 3 | 1–4 | 0.06 | 2.25 | 1.00 | 1.21 | 1.00 | 1.00 | 1.00 | 2 | 2–11 | 0.05 | 2.00 |
| TR1II | 3 | 2–4 | 0.13 | 2.76 | 1.44 | 1.00 | 1.00 | 1.88 | 1.00 | 1 | 1 | 0.00 | 1.00 |
| TR2II | 2 | 2–3 | 0.32 | 2.00 | 1.00 | 1.30 | 1.00 | 1.88 | 1.00 | NA | NA | NA | NA |
| TR3II | 3 | 3–5 | 0.01 | 1.43 | 1.00 | 1.11 | 1.00 | 1.62 | 1.00 | 1 | 1 | 0.00 | 1.00 |
| TR39II | 9 | 5–17 | 0.17 | 4.65 | 1.11 | 1.21 | 1.00 | 3.73 | 1.00 | 1 | 2 | 0.00 | 1.00 |
| TR11II | 3 | 2–4 | 0.15 | 2.77 | 1.38 | 1.46 | 1.00 | 1.97 | 1.00 | 1 | 1 | 0.00 | 1.00 |
| TR19II | 7 | 4–10 | 0.14 | 4.48 | 1.31 | 1.22 | 1.00 | 2.87 | 1.00 | 2 | 1–2 | 0.05 | 2.00 |
| TR64II | 5 | 1–7 | 0.04 | 2.17 | 1.02 | 1.00 | 1.00 | 3.20 | 1.00 | 1 | 1 | 0.00 | 1.00 |
a
n, number of strains; TRI, VNTR designed on P. syringae pv. actinidifoliorum strain ICMP 18807; TRII, VNTR designed on P. syringae pv. actinidiae biovar 3 ICMP 18744; NA, not analyzed.