TABLE 1.
List of putative chromosomal neutral sites identified by analysis of a transcriptomic data seta and suggested neutral sites on small endogenous plasmids
| Neutral site | Replicon | Locusb (bases deleted) | Neutral site length (bp) |
|---|---|---|---|
| NSC1 | Chromosome | 1599539–1600658 (1600073–1600150) | 1,119 |
| NSC2 | Chromosome | 3027658–3028500 (3028002–3028117) | 842 |
| NSC3 | Chromosome | 3449111–3449927 | 816 |
| NSC4 | Chromosome | 3546659–3547441 | 782 |
| NSC5 | Chromosome | 2950392–2951098 | 706 |
| NSC6 | Chromosome | 1639248–1639943 | 695 |
| NSC7 | Chromosome | 1606646–1607303 | 657 |
| NSC8 | Chromosome | 2080121–2080718 | 597 |
| NSC9 | Chromosome | 1923473–1924065 | 592 |
| NSC10 | Chromosome | 2972205–2972781 | 576 |
| NSC11 | Chromosome | 1679804–1680334 | 530 |
| NSC12 | Chromosome | 3324552–3325053 | 501 |
| NSC13 | Chromosome | 2553476–2553961 | 485 |
| NSC14 | Chromosome | 3359043–3359457 | 414 |
| NSC15 | Chromosome | 2790247–2790655 | 408 |
| NS-pCA-1 | pCA2.4 | 2138–647 (390–523) | 887 |
| NS-pCA-2 | pCA2.4 | 1659–1835 (1747–1819) | 177 |
| NS-pCB-1 | pCB2.4 | 430–849 (560–660) | 420 |
| NS-pCB-2 | pCB2.4 | 1497–1595 (1501–1590) | 99 |
| NS-pCC-1 | pCC5.2 | 1046–1599 (1293–1382) | 554 |
| NS-pCC-2 (NSP1) | pCC5.2 | 5137–2 (5151–5199) | 80 |
a
See reference 33.
b
Given as base pair positions in GenBank accession no. BA000022.2 (chromosomal loci), L13739.1 (pCA2.4 loci), L25424.1 (pCB2.4 loci), and CP003272.1 (pCC5.2 loci).