TABLE 2.
Summary of 16S/18S rRNA amplicon sequence data and derived diversity parameters for 23 oil sands outcrop samples and 4 enrichments
Samplea | SRR accession no. | No. of quality control reads | % |
No. of quality control reads for prokaryotes | No. of OTUs |
Shannon's H indexb | Good's coverage (%) | No. of prokaryotic taxa | |||
---|---|---|---|---|---|---|---|---|---|---|---|
Archaea | Bacteria | Eukaryota | Prokaryotes (5% cutoff) | Total (Chao1 indexb) | |||||||
HR_M | 1784302 | 8,797 | 0.54 | 97.25 | 2.23 | 8,601 | 952 | 875 | 4.72 | 95 | 310 |
SR2_C | 621492 | 8,594 | 1.57 | 96.90 | 1.56 | 8,460 | 823 | 677 | 4.16 | 95 | 297 |
HR2_C | 621565 | 9,575 | 1.31 | 97.54 | 1.17 | 9,463 | 858 | 561 | 4.34 | 95 | 287 |
SR1_C | 621490 | 6,207 | 0.11 | 97.56 | 2.29 | 6,065 | 623 | 535 | 4.50 | 95 | 221 |
SR2_S | 621625 | 4,318 | 1.36 | 94.00 | 4.63 | 4,118 | 925 | 1,063 | 5.42 | 88 | 306 |
SR1_S | 621491 | 6,980 | 0.46 | 98.76 | 0.76 | 6,927 | 672 | 682 | 4.41 | 95 | 200 |
HR2_S | 621566 | 12,771 | 0.69 | 99.14 | 0.20 | 12,746 | 906 | 762 | 3.93 | 97 | 277 |
HR1_S | 621563 | 10,923 | 1.02 | 97.74 | 1.25 | 10,787 | 877 | 755 | 4.30 | 96 | 291 |
HR1_C | 621559 | 5,568 | 1.17 | 96.94 | 1.89 | 5,463 | 528 | 455 | 3.59 | 95 | 238 |
OC2007 | 621597 | 5,524 | 2.51 | 95.99 | 1.47 | 5,443 | 674 | 757 | 4.52 | 94 | 282 |
HC_M | 1784301 | 5,564 | 16.38 | 80.09 | 3.54 | 5,367 | 260 | 237 | 3.22 | 98 | 147 |
SC3_C | 621629 | 3,974 | 0.23 | 70.93 | 28.84 | 2,828 | 353 | 458 | 4.03 | 94 | 148 |
SC3_S | 621626 | 7,267 | 0.03 | 71.65 | 28.32 | 5,209 | 449 | 419 | 3.99 | 96 | 150 |
SC2_S | 621628 | 6,217 | 0.03 | 79.84 | 20.12 | 4,966 | 232 | 354 | 2.74 | 98 | 112 |
SC2_C | 621627 | 4,046 | 0 | 76.14 | 23.85 | 3,081 | 165 | 222 | 2.86 | 97 | 87 |
HC1_C | 621560 | 3,349 | 1.46 | 82.01 | 16.54 | 2,795 | 188 | 209 | 3.30 | 97 | 108 |
SC1_S | 621624 | 2,405 | 0.63 | 62.66 | 36.72 | 1,522 | 149 | 247 | 3.28 | 95 | 86 |
HC2_S | 621561 | 5,672 | 0 | 86.49 | 13.50 | 4,906 | 285 | 269 | 3.37 | 97 | 90 |
HC3_S | 621567 | 8,113 | 0.01 | 90.70 | 9.29 | 7,359 | 244 | 187 | 3.12 | 99 | 84 |
HC1_S | 621562 | 8,663 | 0.04 | 86.86 | 13.09 | 7,529 | 302 | 186 | 3.35 | 98 | 115 |
HC3_C | 629322 | 1,490 | 28.26 | 70.39 | 1.34 | 1,470 | 173 | 307 | 3.67 | 94 | 118 |
HC2_C | 629219 | 6,498 | 10.05 | 85.90 | 4.03 | 6,236 | 376 | 369 | 4.21 | 98 | 226 |
SC1_C | 629218 | 6,772 | 11.95 | 86.91 | 1.17 | 6,693 | 357 | 308 | 3.96 | 98 | 225 |
Oxic_4 | 629342 | 2,002 | 0 | 92.00 | 7.99 | 1,842 | 243 | 390 | 3.87 | 93 | 124 |
Oxic_55 | 631218 | 4,406 | 0.11 | 99.73 | 0.16 | 4,399 | 331 | 162 | 2.06 | 98 | 83 |
Anoxic_23 | 631221 | 5,277 | 49.67 | 50.09 | 0.25 | 5,264 | 152 | 326 | 2.68 | 96 | 150 |
Anoxic_60 | 631220 | 4,561 | 45.88 | 52.44 | 1.67 | 4,485 | 225 | 257 | 2.99 | 98 | 128 |
Sum | 171,101 | 159,487 | |||||||||
Total | 4,750 | 723 | |||||||||
Avg | 6.31 | 85.48 | 8.20 | 96 |
The samples are described in Table 1; Oxic_4, Oxic_55, Anoxic_23, and Anoxic_60 are enrichments of OC2007 at the indicated temperatures (4, 55, 23, and 60°C, respectively) in air (oxic) or in H2-CO2 (anoxic). The samples are listed from top to bottom in the same order as the branches in the dendrogram in Fig. 3A.
Biodiversity indices were calculated using a normalized number of 1,490 reads (observed for HC3_C).