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. 2015 Sep 4;81(19):6825–6838. doi: 10.1128/AEM.02221-15

TABLE 2.

Summary of 16S/18S rRNA amplicon sequence data and derived diversity parameters for 23 oil sands outcrop samples and 4 enrichments

Samplea SRR accession no. No. of quality control reads %
No. of quality control reads for prokaryotes No. of OTUs
Shannon's H indexb Good's coverage (%) No. of prokaryotic taxa
Archaea Bacteria Eukaryota Prokaryotes (5% cutoff) Total (Chao1 indexb)
HR_M 1784302 8,797 0.54 97.25 2.23 8,601 952 875 4.72 95 310
SR2_C 621492 8,594 1.57 96.90 1.56 8,460 823 677 4.16 95 297
HR2_C 621565 9,575 1.31 97.54 1.17 9,463 858 561 4.34 95 287
SR1_C 621490 6,207 0.11 97.56 2.29 6,065 623 535 4.50 95 221
SR2_S 621625 4,318 1.36 94.00 4.63 4,118 925 1,063 5.42 88 306
SR1_S 621491 6,980 0.46 98.76 0.76 6,927 672 682 4.41 95 200
HR2_S 621566 12,771 0.69 99.14 0.20 12,746 906 762 3.93 97 277
HR1_S 621563 10,923 1.02 97.74 1.25 10,787 877 755 4.30 96 291
HR1_C 621559 5,568 1.17 96.94 1.89 5,463 528 455 3.59 95 238
OC2007 621597 5,524 2.51 95.99 1.47 5,443 674 757 4.52 94 282
HC_M 1784301 5,564 16.38 80.09 3.54 5,367 260 237 3.22 98 147
SC3_C 621629 3,974 0.23 70.93 28.84 2,828 353 458 4.03 94 148
SC3_S 621626 7,267 0.03 71.65 28.32 5,209 449 419 3.99 96 150
SC2_S 621628 6,217 0.03 79.84 20.12 4,966 232 354 2.74 98 112
SC2_C 621627 4,046 0 76.14 23.85 3,081 165 222 2.86 97 87
HC1_C 621560 3,349 1.46 82.01 16.54 2,795 188 209 3.30 97 108
SC1_S 621624 2,405 0.63 62.66 36.72 1,522 149 247 3.28 95 86
HC2_S 621561 5,672 0 86.49 13.50 4,906 285 269 3.37 97 90
HC3_S 621567 8,113 0.01 90.70 9.29 7,359 244 187 3.12 99 84
HC1_S 621562 8,663 0.04 86.86 13.09 7,529 302 186 3.35 98 115
HC3_C 629322 1,490 28.26 70.39 1.34 1,470 173 307 3.67 94 118
HC2_C 629219 6,498 10.05 85.90 4.03 6,236 376 369 4.21 98 226
SC1_C 629218 6,772 11.95 86.91 1.17 6,693 357 308 3.96 98 225
Oxic_4 629342 2,002 0 92.00 7.99 1,842 243 390 3.87 93 124
Oxic_55 631218 4,406 0.11 99.73 0.16 4,399 331 162 2.06 98 83
Anoxic_23 631221 5,277 49.67 50.09 0.25 5,264 152 326 2.68 96 150
Anoxic_60 631220 4,561 45.88 52.44 1.67 4,485 225 257 2.99 98 128
Sum 171,101 159,487
Total 4,750 723
Avg 6.31 85.48 8.20 96
a

The samples are described in Table 1; Oxic_4, Oxic_55, Anoxic_23, and Anoxic_60 are enrichments of OC2007 at the indicated temperatures (4, 55, 23, and 60°C, respectively) in air (oxic) or in H2-CO2 (anoxic). The samples are listed from top to bottom in the same order as the branches in the dendrogram in Fig. 3A.

b

Biodiversity indices were calculated using a normalized number of 1,490 reads (observed for HC3_C).