Skip to main content
. 2015 Sep 8;3:130. doi: 10.3389/fbioe.2015.00130

Table 2.

The minimal trap spaces of all Boolean models in the ginsim repository are perfect approximations of the attractors of (S, ↪).

Network file (.zginml) |V | Steady Cyclic Faithful Univocal Complete
buddingYeastOrlando2008 9 1 0.08s 0.03s 0.23s
fissionYeastDavidich2008 10 12 0.01s 0.02s 0.08s
boolean_cell_cycle 10 1 1 0.03s 0.19s 0.12s
Toll_Pathway_12Jun2013 11 4 0.01s 0.01s 0.09s
drosophilaCellCycleVariants 14 1 0.01s 0.05s 0.11s
MAPK_red3_19062013 16 12 6 0.15s 1.11s 0.93s
MAPK_red1_19062013 17 12 6 0.18s 1.25s 0.87s
VEGF_Pathway_12Jun2013_0 18 256 0.04s 0.05s 0.28s
MAPK_red2_19062013 18 12 6 0.14s 1.26s 0.67s
buddingYeastIrons2009 18 1 0.16s 0.48s 0.02s
ErbB2_model 20 1 0.08s 0.00s 0.02s
FGF_Pathway_12Jun2013 23 512 0.09s 0.09s 0.51s
Hh---Pathway_11Jun2013_0 24 8192 1.29s 1.43s 6.34s
Spz---Processing_12Jun2013 24 64 0.04s 0.03s 0.22s
Wg_Pathway_11Jun2013 26 16384 2.38s 2.38s 17.16s
TCRsig40 40 7 1 1.07s 3.34s 0.12s
MAPK_large_19june2013 53 12 6 40.15s 565.84s 20.72s
T_LGL 60 86 70 1.07s 6.57s 5669.57s

The number of variables, steady states, and cyclic attractors are recorded in the first three columns. The remaining three columns record the time needed to confirm faithfulness, univocality, and completeness.