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. 2015 Sep 8;10(9):e0137288. doi: 10.1371/journal.pone.0137288

Fig 3. Identification of the recombination event between the major parent strain MDJ-20 (KT156829) (green) and the minor parent strain G1 (KF482468) (blue), which led to the recombinant 08/09 strain (GU380305) (red).

Fig 3

(A) Bootscan evidence for the recombination origin on the basis of pairwise distance, modelled with a window size 200, step size 20 and 100 bootstrap replicates. (B, C, and D) Fast neighbour-joining (NJ) tree (1000 replicates, Kimura two-parameter distance) constructed using the regions derived from minor parent strain (1–809, 1708–1755) (B), the recombination region (810–1707) (C), and non-recombinant region (D). Note. The potential recombination event was detected in Maxchi (P = 8.51E-04), SiSscan (P = 1.05E-02), and Chimaera (P = 7.25E-03) methods.