Table 1.
Characteristics of studied SNPs.
SNP | Chr region | Base position | Gene | Minor/major alleles | Function | MAF |
---|---|---|---|---|---|---|
rs2247421 | 1q41 | 221406312 | G/T | 0.349 | ||
rs4140967 | 1q41 | 221418246 | G/C | 0.312 | ||
rs10776482 | 4p14 | 38451180 | TLR10 | C/T | coding-synonymous | 0.147 |
rs7694115 | 4p14 | 38455489 | TLR10 | G/A | intron | 0.382 |
rs7660429 | 4p14 | 38458876 | TLR10 | G/C | intron | 0.251 |
rs12233670 | 4p14 | 38463611 | T/C | 0.138 | ||
rs10005625 | 4p14 | 38471547 | T/C | 0.003 | ||
rs5743828 | 4p14 | 38503915 | TLR6 | A/G | near-gene-3 (failed) | 0.185 |
rs5743810 | 4p14 | 38506745 | TLR6 | T/C | missense (Ser249Pro) | 0.385 |
rs6531668 | 4p14 | 38509990 | A/G | 0.428 | ||
rs6531670 | 4p14 | 38511417 | C/T | 0.441 | ||
rs1992253 | 4q31.3 | 154822378 | T/C | 0.031 | ||
rs4585282 | 4q31.3 | 154832096 | TLR2 | T/C | intron | 0.01 |
rs7694512 | 4q31.3 | 154837310 | TLR2 | T/G | intron | 0.362 |
rs13123230 | 4q31.3 | 154840035 | TLR2 | G/A | intron | 0.388 |
rs1339 | 4q31.3 | 154851013 | RNF175 | G/A | missense (Met195Ile) | 0.261 |
rs2289318 | 4q31.3 | 154853184 | RNF175 | C/G | intron | 0.255 |
rs11721827 | 4q35.1 | 187228131 | TLR3 | C/A | intron | 0.198 |
rs6552950 | 4q35.1 | 187231850 | TLR3 | G/A | intron | 0.253 |
rs4608848 | 4q35.1 | 187247098 | C/T | 0.383 | ||
rs1519309 | 4q35.1 | 187252083 | G/A | 0.298 | ||
rs10759932 | 9q33.1 | 119504965 | TLR4 | C/T | near-gene-5 | 0.196 |
rs5030728 | 9q33.1 | 119514103 | TLR4 | A/G | intron | 0.269 |
rs5935436 | Xp22.2 | 12793812 | TLR7 | T/C | near-gene-5 | 0.069 |
rs179020 | Xp22.2 | 12799778 | TLR7 | T/C | intron | 0.26 |
rs179013 | Xp22.2 | 12811392 | TLR7 | T/C | intron | 0.266 |
rs179008 | Xp22.2 | 12813580 | TLR7 | T/A | missense (Leu11Gln) | 0.279 |
rs10127190 | Xp22.2 | 12816916 | TLR7 | A/T | UTR-3 | 0.004 |
rs850632 | Xp22.2 | 12819487 | C/T | 0.264 | ||
rs179003 | Xp22.2 | 12823862 | G/T | 0.196 |
MAF, minor allele frequency among vitiligo patients and healthy controls.
RNF175, ring finger protein 175.