Table 3.

Results of haplotype analysis in entire vitiligo group.

Chr region	Block	Haplotype				Freq case	Freq control	P-value
1q41	Block 1	rs2247421	rs4140967
		A	C			0.662	0.644	0.6107
		C	G			0.298	0.316	0.5817
		C	C			0.040	0.038	0.8593
4p14	Block 1	rs10776482	rs7694115	rs7660429
		A	A	C		0.547	0.628	0.021
		A	G	G		0.285	0.235	0.1147
		G	G	C		0.146	0.127	0.4271
		G	A	C		0.019	0.009	0.2357
	Block 2	rs12233670	rs10005625	rs5743810	rs6531668
		C	C	G	G	0.431	0.447	0.6687
		C	C	A	A	0.376	0.382	0.8634
		T	C	G	G	0.144	0.124	0.4179
		C	C	G	A	0.040	0.040	0.9875
4q31.3	Block 1	rs1992253	rs4585282	rs7694512	rs13123230
		C	C	G	A	0.604	0.599	0.8859
		C	C	T	G	0.346	0.322	0.4869
		C	C	G	G	0.022	0.035	0.3251
		T	C	T	G	0.013	0.034	0.0748
	Block 2	rs1339	rs2289318
		T	G			0.494	0.490	0.9195
		C	G			0.249	0.257	0.8088
		T	C			0.251	0.249	0.9398
4q35.1	Block 1	rs11721827	rs6552950	rs4608848	rs1519309
		A	A	T	T	0.248	0.253	0.8802
		A	G	T	T	0.195	0.233	0.2055
		C	A	C	T	0.192	0.171	0.4556
		A	A	C	C	0.143	0.166	0.3951
		A	A	T	C	0.133	0.116	0.4745
		A	G	C	T	0.026	0.013	0.1655
		A	A	C	T	0.038	0.007	7.0E-4*
		C	A	T	T	0.012	0.015	0.6581
9q33.1	Block 1	rs10759932	rs5030728
		T	G			0.575	0.517	0.1331
		T	A			0.223	0.287	0.0596
		C	G			0.203	0.196	0.8298
Xp22.2	Block 1	rs5935436	rs179020
		C	G			0.619	0.699	0.0187
		C	A			0.333	0.222	5.0E-4*
		T	G			0.039	0.076	0.0402
	Block 2	rs179013	rs179008
		G	A			0.672	0.741	0.034
		A	T			0.313	0.242	0.0275
		G	T			0.011	0.015	0.6794
	Block 3	rs10127190	rs850632	rs179003
		T	A	T		0.588	0.601	0.7061
		T	G	T		0.200	0.207	0.8161
		T	A	G		0.145	0.135	0.6818
		T	G	G		0.064	0.052	0.4991

P ≤ 0.05 bolded.

^*P ≤ 0.05 after 10 000 permutations.