Table 3.
Structural and functional features of the 3B syntenic and non-syntenic genes
| Syntenic | Non-syntenic | Significance | |
|---|---|---|---|
| Mean genomic size | 3,299 bp | 3,008 bp | P valuea = 1.1e-4 |
| Median genomic size | 2,259 bp | 1,907 bp | |
| Mean CDS size | 1,252 bp | 1,150 bp | P valuea = 8.3e-3 |
| Median CDS size | 1,070 bp | 1,044 bp | |
| Mean number exons | 4.8 | 3.6 | P valuea = 3.2e-16 |
| Median number exons | 3 | 2 | |
| Expressed | 83 % | 74 % | P valueb = 1.8e-13 |
| Mean number conditions expressedc | 12.0 | 9.2 | P valuea <2.2e-16 |
| Median number conditions expressedc | 15 | 10 | |
| Mean fpkmc | 260.8 | 142.0 | P valuea <2.2e-16 |
| Median fpkmc | 130.8 | 46.3 | |
| Mean number alternative splice variants | 5.3 | 3.6 | P valuec <2.2e-16 |
| Median number alternative splice variants | 2 | 1 |
Percentages are out of the total filtered gene count
a Mann–Whitney-Wilcoxon test
b Chi-squared test
c Of those genes expressed