Table 4.
GO enrichment analysis of Biological Process terms for syntenic genes and non-syntenic genes
| Syntenic genes | ||||||
| GO ID | Term | Annotated | Significant | Expected | P value | Adjusted P value |
| GO:0019219 | Regulation of nucleobase-containing compound metabolic process | 372 | 229 | 176.14 | 4.3e-09 | 8.2e-07 |
| GO:0019222 | Regulation of metabolic process | 437 | 263 | 206.92 | 6.2e-09 | 9.9e-07 |
| GO:0031323 | Regulation of cellular metabolic process | 382 | 232 | 180.88 | 1.9e-08 | 2.7e-06 |
| GO:0060255 | Regulation of macromolecule metabolic process | 404 | 243 | 191.3 | 2.9e-08 | 3.67e-06 |
| GO:0010468 | Regulation of gene expression | 378 | 228 | 178.98 | 6.0e-08 | 5.97e-06 |
| GO:0009889 | Regulation of biosynthetic process | 373 | 225 | 176.62 | 7.4e-08 | 5.97e-06 |
| GO:0010556 | Regulation of macromolecule biosynthetic process | 373 | 225 | 176.62 | 7.4e-08 | 5.97e-06 |
| GO:0031326 | Regulation of cellular biosynthetic process | 373 | 225 | 176.62 | 7.4e-08 | 5.97e-06 |
| GO:0006139 | Nucleobase-containing compound metabolic process | 695 | 391 | 329.09 | 9.7e-08 | 6.8e-06 |
| GO:0010467 | Gene expression | 679 | 378 | 321.51 | 8.5e-07 | 5.0e-05 |
| GO:0044248 | Cellular catabolic process | 163 | 100 | 77.18 | 0.00017 | 0.0090 |
| GO:1901576 | Organic substance catabolic process | 178 | 106 | 84.28 | 0.00054 | 2.1639e-02 |
| GO:0044249 | Cellular biosynthetic process | 742 | 393 | 351.34 | 0.00033 | 1.5428e-02 |
| GO:0016485 | Protein processing | 100 | 64 | 47.35 | 0.00050 | 2.0778e-02 |
| GO:0071704 | Organic substance metabolic process | 2000 | 998 | 947.01 | 0.00029 | 1.4790e-02 |
| GO:0009058 | Biosynthetic process | 750 | 396 | 355.13 | 0.00044 | 1.9747e-02 |
| GO:0015672 | Monovalent inorganic cation transport | 41 | 30 | 19.41 | 0.00067 | 2.3120e-02 |
| GO:0009057 | Macromolecule catabolic process | 146 | 87 | 69.13 | 0.00163 | 4.6894e-02 |
| GO:0006812 | Cation transport | 67 | 44 | 31.72 | 0.00175 | 4.9087e-02 |
| GO:0019941 | Modification-dependent protein catabolic process | 97 | 62 | 45.93 | 0.00064 | 2.3120e-02 |
| GO:0070647 | Protein modification by small protein conjugation or removal | 99 | 62 | 46.88 | 0.00139 | 4.1042e-02 |
| Non-syntenic genes | ||||||
| GO ID | Term | Annotated | Significant | Expected | P value | Adjusted P value |
| GO:0012501 | Programmed cell death | 172 | 53 | 30.12 | 8.5e-06 | 0.00374 |
| GO:0043412 | Macromolecule modification | 663 | 150 | 116.1 | 0.00011 | 0.030855 |