Table 3.
Number of genes associated with 25 general COG functional categories
| Code | XAP | XH | XCZ | Description | |||
|---|---|---|---|---|---|---|---|
|
|
|
|
|||||
| Value | % of totala | Value | % of totala | Value | % of totala | ||
| E | 178 | 6.6 | 176 | 7.3 | 99 | 5.72 | Amino acid transport and metabolism |
| G | 162 | 6.01 | 127 | 5.27 | 86 | 4.97 | Carbohydrate transport and metabolism |
| D | 24 | 0.89 | 23 | 0.95 | 19 | 1.1 | Cell cycle control, cell division, and chromosome partitioning |
| N | 92 | 3.41 | 91 | 3.77 | 60 | 3.47 | Cell motility |
| M | 161 | 5.97 | 131 | 5.43 | 97 | 5.61 | Cell wall, membrane, and envelope biogenesis |
| B | 1 | 0.04 | 0 | 0 | 1 | 0.06 | Chromatin structure and dynamics |
| H | 110 | 4.08 | 85 | 3.52 | 54 | 3.12 | Coenzyme transport and metabolism |
| Z | 1 | 0.04 | 2 | 0.08 | 1 | 0.06 | Cytoskeleton |
| V | 39 | 1.45 | 49 | 2.03 | 19 | 1.1 | Defense mechanisms |
| C | 147 | 5.45 | 150 | 6.22 | 105 | 6.07 | Energy production and conversion |
| S | 265 | 9.83 | 216 | 8.96 | 186 | 10.75 | Function unknown |
| R | 308 | 11.42 | 253 | 10.49 | 206 | 11.91 | General function prediction only |
| P | 135 | 5.01 | 139 | 5.76 | 86 | 4.97 | Inorganic ion transport and metabolism |
| U | 118 | 4.38 | 111 | 4.6 | 63 | 3.64 | Intracellular trafficking, secretion, and vesicular transport |
| I | 110 | 4.08 | 98 | 4.06 | 68 | 3.93 | Lipid transport and metabolism |
| F | 54 | 2 | 52 | 2.16 | 36 | 2.08 | Nucleotide transport and metabolism |
| O | 114 | 4.23 | 96 | 3.98 | 74 | 4.28 | Posttranslational modification, protein turnover, chaperones |
| L | 109 | 4.04 | 99 | 4.1 | 55 | 3.18 | Replication, recombination, and repair |
| A | 1 | 0.04 | 1 | 0.04 | 1 | 0.06 | RNA processing and modification |
| Q | 60 | 2.23 | 68 | 2.82 | 30 | 1.73 | Secondary metabolites biosynthesis, transport, and catabolism |
| T | 175 | 6.49 | 117 | 4.85 | 128 | 7.4 | Signal transduction mechanisms |
| K | 185 | 6.86 | 185 | 7.67 | 147 | 8.5 | Transcription |
| J | 147 | 5.45 | 143 | 5.93 | 109 | 6.3 | Translation, ribosomal structure, and biogenesis |
| W | 0 | 0 | 0 | 0 | 0 | 0 | Extracellular structures |
| Y | 0 | 0 | 0 | 0 | 0 | 0 | Nuclear structure |
| 2875 | 54.38 | 2312 | 51.85 | 6543 | 80.88 | Not in COGs | |
a)
The total is based on the total number of genes associated with COG categories.