Table 3.
Pairwise comparison of results called for NA12877 by 3 platforms
Category | Proton vs. Illumina total (dbSNP| novel)
|
Proton vs. CGI total (dbSNP| novel)
|
Illumina vs. CGI total (dbSNP| novel)
|
||||||
---|---|---|---|---|---|---|---|---|---|
Proton only | Intersection | Illumina only | Proton only | Intersection | CGI only | Illumina only | Intersection | CGI only | |
SNP | 1125 (742|383) | 25726 (25597|129) | 7009 (6200|809) | 2841 (2447|394) | 24010 (23892|118) | 4217 (2802|1415) | 6656 (5815|841) | 26079 (25982|97) | 2148 (712|1436) |
Indel | 883 (111|772) | 597 (570|27) | 924 (831|93) | 892 (124|768) | 588 (557|31) | 1021 (713|308) | 509 (426|83) | 1012 (975|37) | 597 (295|302) |
Total | 2008 (853|1155) | 26323 (26167|156) | 7933 (7031|902) | 3733 (2571|1162) | 24598 (24449|149) | 5238 (3515|1723) | 7165 (6241|924) | 27091 (26957|134) | 2745 (1007|1738) |