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. Author manuscript; available in PMC: 2015 Sep 9.
Published in final edited form as: Hum Genet. 2013 Jun 12;132(10):1153–1163. doi: 10.1007/s00439-013-1321-4

Table 3.

Pairwise comparison of results called for NA12877 by 3 platforms

Category Proton vs. Illumina total (dbSNP| novel)
Proton vs. CGI total (dbSNP| novel)
Illumina vs. CGI total (dbSNP| novel)
Proton only Intersection Illumina only Proton only Intersection CGI only Illumina only Intersection CGI only
SNP 1125 (742|383) 25726 (25597|129) 7009 (6200|809) 2841 (2447|394) 24010 (23892|118) 4217 (2802|1415) 6656 (5815|841) 26079 (25982|97) 2148 (712|1436)
Indel 883 (111|772) 597 (570|27) 924 (831|93) 892 (124|768) 588 (557|31) 1021 (713|308) 509 (426|83) 1012 (975|37) 597 (295|302)
Total 2008 (853|1155) 26323 (26167|156) 7933 (7031|902) 3733 (2571|1162) 24598 (24449|149) 5238 (3515|1723) 7165 (6241|924) 27091 (26957|134) 2745 (1007|1738)
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