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. Author manuscript; available in PMC: 2015 Sep 9.

Published in final edited form as: Hum Genet. 2013 Jun 12;132(10):1153–1163. doi: 10.1007/s00439-013-1321-4

Table 3.

Pairwise comparison of results called for NA12877 by 3 platforms

Category	Proton vs. Illumina total (dbSNP\| novel)			Proton vs. CGI total (dbSNP\| novel)			Illumina vs. CGI total (dbSNP\| novel)
Category	Proton only	Intersection	Illumina only	Proton only	Intersection	CGI only	Illumina only	Intersection	CGI only
SNP	1125 (742\|383)	25726 (25597\|129)	7009 (6200\|809)	2841 (2447\|394)	24010 (23892\|118)	4217 (2802\|1415)	6656 (5815\|841)	26079 (25982\|97)	2148 (712\|1436)
Indel	883 (111\|772)	597 (570\|27)	924 (831\|93)	892 (124\|768)	588 (557\|31)	1021 (713\|308)	509 (426\|83)	1012 (975\|37)	597 (295\|302)
Total	2008 (853\|1155)	26323 (26167\|156)	7933 (7031\|902)	3733 (2571\|1162)	24598 (24449\|149)	5238 (3515\|1723)	7165 (6241\|924)	27091 (26957\|134)	2745 (1007\|1738)

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