. Author manuscript; available in PMC: 2015 Sep 9.

Published in final edited form as: Hum Genet. 2013 Jun 12;132(10):1153–1163. doi: 10.1007/s00439-013-1321-4

Table 4.

Genotype concordance results per sample and platform vs. SNP microarray data

	Proton vs. SNP chip	Illumina vs. SNP chip
NA12889	0.9920	0.9928
NA12890	0.9923	0.9931
# Loci tested	21,078	32,382
# Concordant pairs	34,255	53,313
# Discordant heterozygote → heterozygote	6	4
# Discordant heterozygote → homozygote	189	27
# Discordant homozygote → heterozygote	46	304
# Discordant homozygote → homozygote	29	44

Direction of discordances is always shown as SNP microarray genotype → sequencing platform