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. Author manuscript; available in PMC: 2015 Sep 9.
Published in final edited form as: Hum Genet. 2013 Jun 12;132(10):1153–1163. doi: 10.1007/s00439-013-1321-4

Table 4.

Genotype concordance results per sample and platform vs. SNP microarray data

Proton vs. SNP chip Illumina vs. SNP chip
NA12889 0.9920 0.9928
NA12890 0.9923 0.9931
# Loci tested 21,078 32,382
# Concordant pairs 34,255 53,313
# Discordant heterozygote → heterozygote 6 4
# Discordant heterozygote → homozygote 189 27
# Discordant homozygote → heterozygote 46 304
# Discordant homozygote → homozygote 29 44

Direction of discordances is always shown as SNP microarray genotype → sequencing platform

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