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. 2015 Aug 11;54(35):5513–5522. doi: 10.1021/acs.biochem.5b00754

Table 2. X-ray Diffraction Data Collection and Refinement of Tetragonal Structuresa.

  apo NAD+
beamline APS 19-ID-C ALS 4.2.2
space group P4212 P4212
unit cell parameters a = 159.3 Å a = 158.9 Å
  c =  79.8 Å c = 79.4 Å
wavelength 0.979 1.000
resolution (Å) 46.0–1.90 (1.93–1.90) 53.0–1.90 (1.94–1.90)
no. of observations 1175993 1175225
no. of unique reflections 81138 80249
Rmerge(I) 0.097 (1.209) 0.102 (1.445)
Rmeas(I) 0.100 (1.256) 0.105 (1.504)
Rpim(I) 0.026 (0.336) 0.028 (0.411)
mean I 20.9 (2.4) 23.7 (2.5)
mean CC1/2 0.999 (0.743) 0.999 (0.697)
completeness (%) 99.8 (96.5) 99.7 (95.0)
multiplicity 14.5 (13.5) 14.6 (13.3)
no. of protein chains 2 2
no. of protein residues 948 946
no. of protein atoms 7076 6994
no. of NAD+ atoms 23
no. of water molecules 312 385
Rcryst 0.169 (0.281) 0.182 (0.269)
Rfreeb 0.195 (0.329) 0.213 (0.305)
rmsd for bond lengths (Å) 0.007 0.007
rmsd for bond angles (deg) 0.973 0.967
Ramachandran plotc (%)    
favored 98.30 98.51
outliers 0.11 0.00
all-atom Clashscorec 1.3 2.2
average B factor (Å2)    
protein 34.8 35.2
NAD+ 35.1
water 35.0 32.8
coordinate error (Å)d 0.19 0.20
PDB entry 4ZVX 4ZVY
a

Values for the outer resolution shell of data are given in parentheses.

b

The 5% test set.

c

Generated with MolProbity via PHENIX refine.

d

Maximum likelihood-based coordinate error estimate reported by PHENIX refine.