Table 4.
Haplotype frequencies for 3 SNPs linked to JPH3 gene in South African black HDL2 patients and unaffected individuals
| Haplotypea | Unrelated South African black HDL2 patients (N=16) | Unrelated South African black unaffected individuals (N=25) | ||
|---|---|---|---|---|
| n | Freq | n | Freq | |
| CTT | 4 | 0.13 | 9 | 0.18 |
| CCC | 8 | 0.25 | 12 | 0.24 |
| CTC | 18 | 0.56 | 11 | 0.22 |
| CCT | 0 | 0.00 | 2 | 0.04 |
| Unassigned | 2 | 0.06 | 16 | 0.32 |
| Total | 32 | 1.00 | 50 | 1.00 |
a
SNP order: SNP1 – rs254463, SNP2 – rs3849254, SNP3 – rs918368
n, number of unambiguous haplotypes
Underlined haplotype is HDL2 associated