Table 1.
Alignment statistics result with reference genome for all samples.
| Sample | Total reads | Total base pairs | Total mapped reads/ | Perfect match/match/ | Mismatch/ | Unique match/ | Multi-position match/ | Total unmapped reads/ |
|---|---|---|---|---|---|---|---|---|
| TC1 | 12173342 | 596493758 | 10419039 (85.59%)* | 8842098 (72.63%) | 1576941 (12.95%) | 10026087 (82.36%) | 392952 (3.23%) | 1754303 (14.41%) |
| TC2 | 12175372 | 596593228 | 10291852 (84.53%) | 8683647 (71.32%) | 1608205 (13.21%) | 9910113 (81.39%) | 381739 (3.14%) | 1883520 (15.47%) |
| TC3 | 12175309 | 596590141 | 10280870 (84.44%) | 8671568 (71.22%) | 1609302 (13.22%) | 9888545 (81.22%) | 392325 (3.22%) | 1894439 (15.56%) |
| TM1 | 12172555 | 596455195 | 10479406 (86.09%) | 9031982 (74.20%) | 1447424 (11.89%) | 10118908 (83.13%) | 360498 (2.96%) | 1693149 (13.91%) |
| TM2 | 12165484 | 596108716 | 10357756 (85.14%) | 8719061 (71.67%) | 1638695 (13.47%) | 9885908 (81.26%) | 471848 (3.88%) | 1807728 (14.86%) |
| TM3 | 12175211 | 596585339 | 10470208 (86.00%) | 8843302 (72.63%) | 1626906 (13.36%) | 10065455 (82.67%) | 404753 (3.32%) | 1705003 (14.00%) |
*
Indicates percentages in total reads.