Table 2. Abundance of conserved and non-conserved miRNA families from CK and Cr200 libraries in radish.
Family | Number of members |
miRNA reads |
Normalized read count |
Fold change log2(Cr200/CK) | ||
---|---|---|---|---|---|---|
CK | Cr200 | CK | Cr200 | |||
Conserved miRNA | ||||||
miR156/157 | 5 | 366,511 | 265,213 | 20,218.44 | 13,564.31 | −0.58 |
miR158 | 2 | 699,489 | 1,730,976 | 38,587.04 | 88,530.74 | 1.20 |
miR159 | 1 | 2,645 | 1,201 | 145.91 | 61.43 | −1.25 |
miR160 | 4 | 2,652 | 1,644 | 146.30 | 84.08 | −0.80 |
miR161 | 1 | 0 | 151 | 0.01 | 7.72 | 9.59 |
miR162 | 1 | 750 | 1,438 | 41.37 | 73.55 | 0.83 |
miR164 | 2 | 20,482 | 36,698 | 1,129.88 | 1,876.92 | 0.73 |
miR165/166 | 5 | 91,078 | 250,786 | 5,024.28 | 12,826.45 | 1.35 |
miR167 | 2 | 19,807 | 21,945 | 1,092.65 | 1,122.38 | 0.04 |
miR168 | 2 | 196,680 | 86,888 | 10,849.78 | 4,443.89 | −1.29 |
miR169 | 4 | 9,690 | 4,742 | 534.55 | 242.53 | −1.14 |
miR171 | 1 | 155 | 299 | 8.55 | 15.29 | 0.84 |
miR172 | 2 | 1,024 | 16,755 | 56.49 | 856.93 | 3.92 |
miR319 | 2 | 13,971 | 8,927 | 770.70 | 456.57 | −0.76 |
miR390 | 2 | 324 | 6,464 | 17.87 | 330.60 | 4.21 |
miR391 | 2 | 1,066 | 2,988 | 58.81 | 152.82 | 1.38 |
miR393 | 1 | 15 | 13 | 0.83 | 0.66 | −0.32 |
miR394 | 2 | 201 | 946 | 11.09 | 48.38 | 2.13 |
miR395 | 2 | 71 | 247 | 3.92 | 12.63 | 1.69 |
miR396 | 2 | 958 | 2,301 | 52.85 | 117.68 | 1.16 |
miR397 | 1 | 15,201 | 927 | 838.56 | 47.41 | −4.14 |
miR398 | 3 | 1,934 | 64 | 106.69 | 3.27 | −5.03 |
miR399 | 2 | 142 | 87 | 7.83 | 4.45 | −0.82 |
miR408 | 1 | 266,952 | 32,197 | 14,726.31 | 1,646.72 | −3.16 |
Non-conserved miRNA | ||||||
miR400 | 1 | 109 | 84 | 6.01 | 4.30 | −0.49 |
miR403 | 1 | 1,634 | 1,825 | 90.14 | 93.34 | 0.05 |
miR414 | 1 | 344 | 0 | 18.98 | 0.01 | −10.89 |
miR415 | 1 | 0 | 229 | 0.01 | 11.71 | 10.19 |
miR482 | 1 | 134 | 2,254 | 7.39 | 115.28 | 3.96 |
miR535 | 2 | 34 | 2,034 | 1.88 | 104.03 | 5.79 |
miR824 | 2 | 529 | 2,477 | 29.18 | 126.69 | 2.12 |
miR825 | 1 | 1,455 | 1,835 | 80.26 | 93.85 | 0.23 |
miR827 | 1 | 275 | 509 | 15.17 | 26.03 | 0.78 |
miR845 | 2 | 3,003 | 5,968 | 165.66 | 305.23 | 0.88 |
miR854 | 1 | 229 | 387 | 12.63 | 19.79 | 0.65 |
miR857 | 1 | 1,413 | 240 | 77.95 | 12.27 | −2.67 |
miR858 | 2 | 23 | 13 | 1.27 | 0.66 | −0.93 |
miR860 | 1 | 58 | 345 | 3.20 | 17.65 | 2.46 |
miR1885 | 1 | 5,417 | 6,787 | 298.83 | 347.12 | 0.22 |
miR2111 | 3 | 280 | 104 | 15.45 | 5.32 | −1.54 |
miR2118 | 1 | 27,628 | 23,077 | 1,524.09 | 1,180.27 | −0.37 |
miR4993 | 1 | 0 | 306 | 0.01 | 15.65 | 10.61 |
miR5265 | 1 | 0 | 261 | 0.01 | 13.35 | 10.38 |
miR5293 | 1 | 143 | 551 | 7.89 | 28.18 | 1.84 |
miR5671 | 1 | 0 | 3,860 | 0.01 | 197.42 | 14.27 |
miR7767 | 2 | 9,153 | 23,835 | 504.92 | 1,219.04 | 1.27 |