Table 3. Known Cr-responsive miRNAs from CK and Cr200 libraries in radish.
| Family | miRNA name |
miRNA reads |
Normalized reads |
Fold change log2 (Cr200/CK) | P-value | Sig-lable | Regulated | ||
|---|---|---|---|---|---|---|---|---|---|
| CK | Cr200 | CK | Cr200 | ||||||
| miR156/157 | miR156a | 94,427 | 59,654 | 5,209.0295 | 3,051.0028 | −0.77 | 0 | down-regulated | |
| miR156a-3p | 257 | 0 | 14.1773 | 0.0100 | −10.47 | 2.10E-82 | ** | down-regulated | |
| miR156f-3p | 0 | 286 | 0.0100 | 14.6275 | 10.51 | 3.36E-82 | ** | up-regulated | |
| miR157a | 268,528 | 202,820 | 14,813.2449 | 10,373.2254 | −0.51 | 0 | down-regulated | ||
| miR157a-3p | 3,299 | 2,453 | 181.9881 | 125.4586 | −0.54 | 9.42E-45 | down-regulated | ||
| miR159 | miR159a | 2,645 | 1,201 | 145.9104 | 61.4251 | −1.25 | 9.43E-148 | ** | down-regulated |
| miR160 | miR160a | 0 | 411 | 0.0100 | 21.0206 | 11.04 | 8.12E-118 | ** | up-regulated |
| miR160b | 80 | 0 | 4.4132 | 0.0100 | −8.79 | 3.66E-26 | ** | down-regulated | |
| miR160b-3p | 2,572 | 0 | 141.8834 | 0.0100 | −13.79 | 0 | ** | down-regulated | |
| miR160d-3p | 0 | 1,233 | 0.0100 | 63.0618 | 12.62 | 0 | ** | up-regulated | |
| miR161 | miR161 | 0 | 151 | 0.0100 | 7.7229 | 9.59 | 9.81E-44 | ** | up-regulated |
| miR164 | miR164b-3p | 130 | 42 | 7.1708 | 2.1481 | −1.74 | 2.24E-13 | ** | down-regulated |
| miR165/166 | miR165a | 1,978 | 11,721 | 109.1156 | 599.4703 | 2.46 | 0 | ** | up-regulated |
| miR165a-3p | 173 | 10,692 | 9.5435 | 546.8422 | 5.84 | 0 | ** | up-regulated | |
| miR166e-3p | 0 | 1,029 | 0.0100 | 52.6282 | 12.36 | 6.65E-294 | ** | up-regulated | |
| miR166g-3p | 285 | 0 | 15.7219 | 0.0100 | −10.62 | 2.66E-91 | ** | down-regulated | |
| miR168 | miR168a | 195,230 | 85,348 | 10,769.7886 | 4,365.1220 | −1.30 | 0 | ** | down-regulated |
| miR169 | miR169b | 884 | 0 | 48.7655 | 0.0100 | −12.25 | 1.24E-281 | ** | down-regulated |
| miR169j-3p | 0 | 819 | 0.0100 | 41.8877 | 12.03 | 4.55E-234 | ** | up-regulated | |
| miR169m | 0 | 3,923 | 0.0100 | 200.6418 | 14.29 | 0 | ** | up-regulated | |
| miR169r-3p | 8,806 | 0 | 485.7796 | 0.0100 | −15.57 | 0 | ** | down-regulated | |
| miR172 | miR172c | 1,024 | 16,685 | 56.4886 | 853.3540 | 3.92 | 0 | ** | up-regulated |
| miR172e-3p | 0 | 70 | 0.01 | 3.5801 | 8.48 | 1.18E-20 | ** | up-regulated | |
| miR319 | miR319a-3p | 710 | 219 | 39.1669 | 11.2008 | −1.81 | 1.17E-69 | ** | down-regulated |
| miR319b-5p | 13,261 | 8,708 | 731.538 | 445.3705 | −0.72 | 2.73E-290 | down-regulated | ||
| miR390 | miR390a | 314 | 6,289 | 17.3217 | 321.6508 | 4.21 | 0 | ** | up-regulated |
| miR390a-3p | 10 | 175 | 0.5516 | 8.9504 | 4.02 | 1.07E-37 | ** | up-regulated | |
| miR391 | miR391-3p | 0 | 21 | 0.0100 | 1.0740 | 6.75 | 1.08E-06 | ** | up-regulated |
| miR394 | miR394a | 14 | 613 | 0.7723 | 31.3519 | 5.34 | 1.21E-151 | ** | up-regulated |
| miR395 | miR395a | 71 | 0 | 3.9167 | 0.0100 | −8.61 | 2.65E-23 | ** | down-regulated |
| miR395b | 0 | 247 | 0.0100 | 12.6328 | 10.30 | 4.35E-71 | ** | up-regulated | |
| miR397 | miR397a | 15,201 | 927 | 838.5574 | 47.4114 | −4.14 | 0 | ** | down-regulated |
| miR398 | miR398b-3p | 133 | 0 | 7.3369 | 0.0100 | −9.52 | 5.28E-43 | ** | down-regulated |
| miR398b-5p | 0 | 64 | 0.0100 | 3.2733 | 8.35 | 6.03E-19 | ** | up-regulated | |
| miR398c-5p | 1,801 | 0 | 99.3515 | 0.0100 | −13.28 | 0 | ** | down-regulated | |
| miR399 | miR399b | 0 | 87 | 0.0100 | 4.4496 | 8.80 | 1.69E-25 | ** | up-regulated |
| miR399h-5p | 142 | 0 | 7.8334 | 0.0100 | −9.61 | 7.29E-46 | ** | down-regulated | |
| miR408 | miR408-5p | 266,952 | 32,197 | 14,726.3054 | 1,646.7150 | −3.16 | 0 | ** | down-regulated |
| miR414 | miR414 | 344 | 0 | 18.9766 | 0.0100 | −10.89 | 4.76E-110 | ** | down-regulated |
| miR415 | miR415 | 0 | 229 | 0.0100 | 11.71 | 10.19 | 5.85E-66 | ** | up-regulated |
| miR482 | miR482a-5p | 134 | 2,254 | 7.3921 | 115.2808 | 3.96 | 0 | ** | up-regulated |
| miR535 | miR535b | 0 | 2,034 | 0.01 | 104.0289 | 13.34 | 0 | ** | up-regulated |
| miR535d | 34 | 0 | 1.8756 | 0.0100 | −7.55 | 1.51E-11 | ** | down-regulated | |
| miR824 | miR824-3p | 109 | 1,565 | 6.0129 | 80.0419 | 3.73 | 1.57E-307 | ** | up-regulated |
| miR845 | miR845d | 1,282 | 74 | 70.7148 | 3.7847 | −4.22 | 9.51E-306 | ** | down-regulated |
| miR857 | miR857 | 1,413 | 240 | 77.9407 | 12.2748 | −2.67 | 4.08E-222 | ** | down-regulated |
| miR860 | miR860 | 58 | 345 | 3.1995 | 17.645 | 2.46 | 2.01E-46 | ** | up-regulated |
| miR2111 | miR2111a-3p | 140 | 0 | 7.7230 | 0.0100 | −9.59 | 3.15E-45 | ** | down-regulated |
| miR2111a-5p | 140 | 61 | 7.7230 | 3.1198 | −1.31 | 7.17E-10 | ** | down-regulated | |
| miR2111b-3p | 0 | 43 | 0.0100 | 2.1992 | 7.78 | 5.81E-13 | ** | up-regulated | |
| miR4993 | miR4993 | 0 | 306 | 0.0100 | 15.6504 | 10.61 | 6.72E-88 | ** | up-regulated |
| miR5265 | miR5265 | 0 | 261 | 0.0100 | 13.3488 | 10.38 | 4.46E-75 | ** | up-regulated |
| miR5293 | miR5293 | 143 | 771 | 7.8885 | 39.4328 | 2.29 | 5.15E-51 | ** | up-regulated |
| miR5671 | miR5671 | 0 | 3,860 | 0.0100 | 197.42 | 14.27 | 0 | ** | up-regulated |
**indicates significant differences in expression between two libraries at P < 0.01.